Variant report

Variant	rs10803734
Chromosome Location	chr2:11539559-11539560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11526922..11531948-chr2:11535664..11539994,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231403	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10183250	1.00[EUR][1000 genomes]
rs13421766	1.00[EUR][1000 genomes]
rs16857649	1.00[EUR][1000 genomes]
rs4668728	1.00[EUR][1000 genomes]
rs4669732	1.00[EUR][1000 genomes]
rs4669734	1.00[EUR][1000 genomes]
rs56239196	1.00[EUR][1000 genomes]
rs56252168	1.00[EUR][1000 genomes]
rs56273175	1.00[EUR][1000 genomes]
rs56834951	1.00[EUR][1000 genomes]
rs57251854	1.00[EUR][1000 genomes]
rs58477298	1.00[EUR][1000 genomes]
rs58819315	1.00[EUR][1000 genomes]
rs59554925	1.00[EUR][1000 genomes]
rs60798771	1.00[EUR][1000 genomes]
rs61091666	1.00[EUR][1000 genomes]
rs61358269	1.00[EUR][1000 genomes]
rs6432204	1.00[EUR][1000 genomes]
rs6432205	1.00[EUR][1000 genomes]
rs6432206	1.00[EUR][1000 genomes]
rs6710070	1.00[EUR][1000 genomes]
rs6712902	1.00[EUR][1000 genomes]
rs6739988	1.00[EUR][1000 genomes]
rs73180141	1.00[EUR][1000 genomes]
rs73915200	1.00[EUR][1000 genomes]
rs73915202	1.00[EUR][1000 genomes]
rs73917203	1.00[EUR][1000 genomes]
rs73917206	1.00[EUR][1000 genomes]
rs73917207	1.00[EUR][1000 genomes]
rs7559230	1.00[EUR][1000 genomes]
rs7565382	1.00[EUR][1000 genomes]
rs7585718	1.00[EUR][1000 genomes]
rs7598673	1.00[EUR][1000 genomes]
rs7608777	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11528000-11539800	Enhancers	Fetal Muscle Leg	muscle
2	chr2:11530200-11540400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:11530400-11546000	Weak transcription	Psoas Muscle	Psoas
4	chr2:11533800-11539800	Enhancers	Fetal Heart	heart
5	chr2:11533800-11540200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:11534000-11544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:11534600-11547000	Weak transcription	HSMM	muscle
8	chr2:11535800-11543800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:11535800-11543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:11536400-11542800	Weak transcription	Spleen	Spleen
11	chr2:11536600-11539600	Enhancers	Fetal Lung	lung
12	chr2:11537200-11540400	Enhancers	Placenta	Placenta
13	chr2:11537400-11544000	Weak transcription	Lung	lung
14	chr2:11537400-11545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:11538000-11540400	Enhancers	Fetal Muscle Trunk	muscle
16	chr2:11538400-11539800	Enhancers	Small Intestine	intestine
17	chr2:11538400-11539800	Enhancers	Stomach Mucosa	stomach
18	chr2:11538400-11544200	Weak transcription	Right Ventricle	heart
19	chr2:11538600-11539800	Enhancers	K562	blood
20	chr2:11538800-11539800	Enhancers	HepG2	liver
21	chr2:11539000-11539600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr2:11539000-11539800	Enhancers	Colonic Mucosa	Colon
23	chr2:11539000-11539800	Enhancers	Fetal Intestine Large	intestine
24	chr2:11539000-11540800	Enhancers	Fetal Intestine Small	intestine
25	chr2:11539000-11543600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr2:11539000-11543800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:11539000-11544000	Weak transcription	A549	lung
28	chr2:11539200-11540200	Weak transcription	Gastric	stomach
29	chr2:11539200-11540600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:11539200-11543800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:11539200-11544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:11539200-11544800	Weak transcription	Left Ventricle	heart
33	chr2:11539400-11539600	Enhancers	Duodenum Mucosa	Duodenum
34	chr2:11539400-11539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:11539400-11539800	Enhancers	Hela-S3	cervix
36	chr2:11539400-11540400	Enhancers	Rectal Mucosa Donor 31	rectum

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