Variant report

Variant	rs10803736
Chromosome Location	chr2:11597908-11597909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11597066..11598625-chr4:14277581..14279959,2	MCF-7	breast:
2	chr2:11587956..11589833-chr2:11597471..11599189,2	K562	blood:
3	chr2:11590776..11592328-chr2:11597305..11600154,2	MCF-7	breast:
4	chr2:11595658..11598467-chr2:11600589..11603076,4	K562	blood:

Variant related genes	Relation type
ENSG00000169016	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4408699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4668727	1.00[YRI][hapmap]
rs73915450	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11577600-11603800	Weak transcription	Colonic Mucosa	Colon
2	chr2:11579000-11604800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:11580200-11604000	Weak transcription	Fetal Brain Male	brain
4	chr2:11584400-11598800	Strong transcription	A549	lung
5	chr2:11584400-11599600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:11586400-11598600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:11586600-11598800	Strong transcription	Hela-S3	cervix
8	chr2:11587200-11598400	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:11587200-11605400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:11587400-11598400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:11587400-11605200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:11587600-11598400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:11587600-11602200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr2:11587600-11603800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:11587600-11605400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:11588200-11598400	Weak transcription	Brain Substantia Nigra	brain
17	chr2:11588200-11598400	Weak transcription	Stomach Mucosa	stomach
18	chr2:11589000-11604800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:11589200-11598600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:11589200-11605400	Weak transcription	Thymus	Thymus
21	chr2:11589400-11605400	Weak transcription	Fetal Kidney	kidney
22	chr2:11589600-11603200	Weak transcription	Spleen	Spleen
23	chr2:11589600-11605400	Weak transcription	Esophagus	oesophagus
24	chr2:11589800-11603800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:11590000-11604000	Weak transcription	Brain Germinal Matrix	brain
26	chr2:11590200-11598200	Weak transcription	Right Ventricle	heart
27	chr2:11590200-11598400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:11590200-11598400	Weak transcription	Gastric	stomach
29	chr2:11590200-11598400	Weak transcription	Pancreas	Pancrea
30	chr2:11590200-11603800	Weak transcription	Small Intestine	intestine
31	chr2:11590200-11604800	Weak transcription	Primary B cells from cord blood	blood
32	chr2:11590200-11605400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:11591400-11599400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr2:11591600-11603800	Weak transcription	Aorta	Aorta
35	chr2:11592000-11603800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:11592000-11603800	Weak transcription	Fetal Intestine Small	intestine
37	chr2:11592200-11599200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr2:11592400-11601200	Weak transcription	Lung	lung
39	chr2:11592400-11603000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:11592600-11603800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:11593400-11598400	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:11593400-11605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:11593600-11598400	Weak transcription	Brain Anterior Caudate	brain
44	chr2:11593600-11602600	Weak transcription	Fetal Brain Female	brain
45	chr2:11593600-11603400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr2:11593800-11598200	Weak transcription	Left Ventricle	heart
47	chr2:11593800-11602600	Weak transcription	Fetal Lung	lung
48	chr2:11593800-11605000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:11593800-11605200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr2:11594000-11598400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links