Variant report

Variant	rs10807388
Chromosome Location	chr6:13031745-13031746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11758659	0.81[EUR][1000 genomes]
rs12216401	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1579135	0.90[ASN][1000 genomes]
rs1937771	0.92[ASN][1000 genomes]
rs4132046	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4292514	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4349811	0.82[EUR][1000 genomes]
rs4357136	0.92[ASN][1000 genomes]
rs4367379	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4432976	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4492189	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580867	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4624870	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715048	0.82[EUR][1000 genomes]
rs5002331	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6924689	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341250	0.81[EUR][1000 genomes]
rs7738606	0.95[ASN][1000 genomes]
rs7748124	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349456	0.95[ASN][1000 genomes]
rs9369759	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369760	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369768	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369779	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9369815	0.92[ASN][1000 genomes]
rs9381636	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395335	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463363	0.82[EUR][1000 genomes]
rs9463364	0.81[EUR][1000 genomes]
rs9473198	0.82[EUR][1000 genomes]
rs9473437	0.92[ASN][1000 genomes]
rs9473486	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13025600-13031800	Enhancers	Fetal Heart	heart
2	chr6:13026600-13034600	Weak transcription	Fetal Brain Female	brain
3	chr6:13027000-13032600	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:13027200-13037400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:13027600-13033000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:13027600-13038000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:13027800-13039000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:13028000-13032800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:13028000-13034800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:13028600-13034200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:13029800-13036400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:13029800-13037200	Weak transcription	Left Ventricle	heart
13	chr6:13029800-13037400	Weak transcription	Right Ventricle	heart
14	chr6:13029800-13044600	Weak transcription	Lung	lung
15	chr6:13029800-13056400	Weak transcription	Pancreas	Pancrea
16	chr6:13030000-13056400	Weak transcription	Brain Germinal Matrix	brain
17	chr6:13030200-13036800	Weak transcription	Aorta	Aorta
18	chr6:13031200-13032800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:13031400-13032800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:13031400-13038800	Weak transcription	Brain Hippocampus Middle	brain

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