Variant report

Variant	rs10808049
Chromosome Location	chr7:147730564-147730565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10240221	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1541412	0.86[JPT][hapmap]
rs2527049	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2527051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2527054	0.92[CHB][hapmap]
rs2707560	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2707563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2707582	0.80[CEU][hapmap]
rs2710074	0.82[EUR][1000 genomes]
rs2710127	0.91[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs2710132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2710135	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2710157	0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4571659	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4725757	0.96[CEU][hapmap];0.87[JPT][hapmap]
rs4725758	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs4726903	0.86[JPT][hapmap]
rs4726912	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6942912	0.84[CHB][hapmap]
rs6946207	0.82[CHB][hapmap]
rs6949561	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6953539	0.80[JPT][hapmap]
rs6969904	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6970083	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs757696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs961519	0.96[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs993715	0.96[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links