Variant report

Variant	rs10808135
Chromosome Location	chr7:104542770-104542771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10247369	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12667927	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232695	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041830	0.87[EUR][1000 genomes]
rs2214083	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2430483	0.85[ASN][1000 genomes]
rs2470934	0.89[ASN][1000 genomes]
rs2891785	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34477839	0.87[EUR][1000 genomes]
rs3815553	0.87[EUR][1000 genomes]
rs62485455	0.89[EUR][1000 genomes]
rs6950960	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs735443	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104535000-104557000	Weak transcription	Fetal Kidney	kidney
2	chr7:104537200-104545200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:104538200-104546600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104539600-104542800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:104541800-104546000	Strong transcription	Fetal Intestine Small	intestine
6	chr7:104542000-104543200	Weak transcription	Fetal Lung	lung
7	chr7:104542400-104543400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:104542400-104552400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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