Variant report

Variant	rs10808255
Chromosome Location	chr7:80368692-80368693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80357601..80359638-chr7:80366239..80368776,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11770916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12670520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358339	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405746	0.87[AFR][1000 genomes]
rs1527466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527473	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609152	0.87[AFR][1000 genomes]
rs1852539	0.86[AFR][1000 genomes]
rs1918371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1949970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2222713	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467371	0.80[AFR][1000 genomes]
rs6958853	1.00[AMR][1000 genomes]
rs6958863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963015	0.97[AFR][1000 genomes]
rs6969280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9641897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:80359400-80370200	Weak transcription	NHLF	lung
4	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
5	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
7	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
9	chr7:80366200-80370200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:80366200-80370800	Weak transcription	HMEC	breast
11	chr7:80366200-80374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:80367000-80368800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:80367000-80369000	Weak transcription	HSMM	muscle
14	chr7:80367000-80369600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:80367400-80370600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:80367600-80370200	Weak transcription	NH-A	brain
17	chr7:80367600-80370400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:80367800-80368800	Weak transcription	A549	lung
19	chr7:80368400-80394800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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