Variant report

Variant	rs10810374
Chromosome Location	chr9:15306292-15306293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15300090..15302521-chr9:15304681..15306725,2	MCF-7	breast:
2	chr9:15305088..15306661-chr9:15415103..15416933,2	MCF-7	breast:
3	chr9:15305128..15307154-chr9:15417021..15419951,2	MCF-7	breast:
4	chr9:15306135..15309581-chr9:15420818..15425516,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10121612	0.88[ASN][1000 genomes]
rs4008004	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs491322	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv613650	chr9:15296119-15378449	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv613651	chr9:15296355-15358157	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1015960	chr9:15296783-15380657	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv524849	chr9:15299590-15362057	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15304200-15307600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:15305000-15307000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr9:15305200-15306600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:15305200-15306600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr9:15305200-15306800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15305400-15307600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:15305600-15306400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr9:15305600-15306400	Flanking Active TSS	Liver	Liver
9	chr9:15305600-15306600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr9:15305600-15306600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:15305600-15306600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:15305600-15306800	Flanking Active TSS	Fetal Thymus	thymus
13	chr9:15305600-15307200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:15305600-15307600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr9:15305600-15307600	Active TSS	Rectal Smooth Muscle	rectum
16	chr9:15305600-15307800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:15305600-15307800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:15305600-15307800	Active TSS	Aorta	Aorta
19	chr9:15305600-15308000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:15305800-15306400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:15305800-15306600	Enhancers	Fetal Heart	heart
22	chr9:15305800-15306800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:15305800-15306800	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr9:15305800-15306800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr9:15305800-15306800	Flanking Active TSS	Thymus	Thymus
26	chr9:15305800-15307000	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr9:15305800-15307200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:15305800-15307200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:15305800-15307400	Active TSS	Colonic Mucosa	Colon
30	chr9:15305800-15307400	Active TSS	Fetal Intestine Large	intestine
31	chr9:15305800-15307600	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr9:15305800-15307600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr9:15305800-15307600	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr9:15305800-15307600	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr9:15305800-15307600	Active TSS	Esophagus	oesophagus
36	chr9:15305800-15307600	Active TSS	Psoas Muscle	Psoas
37	chr9:15305800-15307600	Active TSS	NHDF-Ad	bronchial
38	chr9:15305800-15307800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr9:15305800-15307800	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr9:15305800-15307800	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr9:15305800-15307800	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr9:15305800-15307800	Active TSS	Right Atrium	heart
43	chr9:15305800-15307800	Active TSS	HSMMtube	muscle
44	chr9:15306000-15306400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr9:15306000-15306400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
46	chr9:15306000-15306400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:15306000-15306400	Flanking Active TSS	Fetal Brain Female	brain
48	chr9:15306000-15306600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr9:15306000-15306600	Active TSS	Brain Germinal Matrix	brain
50	chr9:15306000-15306600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

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