Variant report

Variant	rs10810563
Chromosome Location	chr9:16399953-16399954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1057383	0.96[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1927619	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs1999032	0.82[CEU][hapmap];0.95[JPT][hapmap]
rs4961488	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4961717	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6475050	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6475052	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6475053	0.82[CEU][hapmap]
rs6475054	0.93[CEU][hapmap]
rs7026798	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs7035049	0.96[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7039703	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7046026	0.96[CEU][hapmap]
rs717267	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7853747	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7856438	0.82[CEU][hapmap]
rs9298764	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs9406643	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16392000-16406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16394000-16406800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16398600-16400600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:16398800-16400000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:16398800-16400400	Enhancers	Osteobl	bone
6	chr9:16398800-16400600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:16399000-16401000	Enhancers	A549	lung
8	chr9:16399400-16400600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr9:16399600-16400000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:16399600-16400000	Enhancers	Hela-S3	cervix
11	chr9:16399600-16400200	Enhancers	NHDF-Ad	bronchial
12	chr9:16399600-16400400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:16399600-16400400	Enhancers	HSMM	muscle
14	chr9:16399600-16400400	Enhancers	NHEK	skin
15	chr9:16399800-16400200	Enhancers	Fetal Intestine Large	intestine
16	chr9:16399800-16400200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:16399800-16400200	Enhancers	HSMMtube	muscle
18	chr9:16399800-16400400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:16399800-16400400	Enhancers	NH-A	brain
20	chr9:16399800-16400600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:16399800-16400600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:16399800-16400600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:16399800-16400600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:16399800-16400600	Enhancers	HMEC	breast
25	chr9:16399800-16400800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:16399800-16401000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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