Variant report

Variant	rs10810585
Chromosome Location	chr9:16671045-16671046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12343524	0.87[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv892648	chr9:16661092-16680901	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10810585	C9orf150	cis	cerebellum	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16657600-16681400	Weak transcription	Psoas Muscle	Psoas
2	chr9:16664400-16671400	Weak transcription	A549	lung
3	chr9:16665000-16704400	Weak transcription	Aorta	Aorta
4	chr9:16667200-16671800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:16667200-16681000	Weak transcription	Fetal Stomach	stomach
6	chr9:16667400-16671200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:16667600-16671400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:16668400-16672200	Enhancers	Osteobl	bone
9	chr9:16668400-16679000	Weak transcription	Ovary	ovary
10	chr9:16668600-16672000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:16668800-16679600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:16669000-16681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:16669400-16672200	Enhancers	Fetal Kidney	kidney
14	chr9:16670200-16671200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:16670200-16675200	Enhancers	NHDF-Ad	bronchial
16	chr9:16670400-16672000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:16670600-16671600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:16670800-16671200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:16670800-16671200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:16670800-16671200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:16670800-16671200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr9:16670800-16671600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:16670800-16671600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:16670800-16671800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:16670800-16671800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:16670800-16672000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:16670800-16672200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:16670800-16672200	Enhancers	NHLF	lung
29	chr9:16670800-16672400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:16670800-16674400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:16671000-16671200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr9:16671000-16671200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr9:16671000-16671200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr9:16671000-16671200	Enhancers	HUVEC	blood vessel
35	chr9:16671000-16671600	Enhancers	Rectal Smooth Muscle	rectum
36	chr9:16671000-16672000	Enhancers	HMEC	breast
37	chr9:16671000-16672000	Enhancers	HSMM	muscle
38	chr9:16671000-16672000	Enhancers	NHEK	skin
39	chr9:16671000-16673600	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links