Variant report

Variant	rs1081074
Chromosome Location	chr6:132931457-132931458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28431469	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3813353	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61745666	0.93[ASN][1000 genomes]
rs7738600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7741930	0.96[ASN][1000 genomes]
rs7759004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7763027	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7764168	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7769453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9483484	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs9483489	0.89[AMR][1000 genomes]
rs9493400	0.85[ASN][1000 genomes]
rs9493401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493402	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132926200-132933600	Weak transcription	Stomach Mucosa	stomach
2	chr6:132926600-132931800	Weak transcription	Small Intestine	intestine
3	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
4	chr6:132928200-132932200	Enhancers	Fetal Intestine Large	intestine
5	chr6:132929000-132933600	Weak transcription	HepG2	liver
6	chr6:132929400-132931600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:132929600-132932000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:132929800-132931800	Weak transcription	Pancreas	Pancrea
9	chr6:132930000-132931800	Weak transcription	Liver	Liver
10	chr6:132930400-132934000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132930400-132935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:132930600-132931600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:132930600-132932000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:132931000-132931800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:132931000-132934000	Weak transcription	Brain Substantia Nigra	brain
17	chr6:132931400-132931800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:132931400-132932200	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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