Variant report

Variant	rs10810834
Chromosome Location	chr9:17713235-17713236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10756899	0.86[CHB][hapmap]
rs10756901	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10756902	1.00[CEU][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs10756904	0.91[CEU][hapmap];0.81[TSI][hapmap]
rs10810829	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810830	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10963233	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs1536072	0.95[CEU][hapmap];0.91[CHB][hapmap]
rs1536076	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2209440	0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs717372	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv466279	chr9:17699981-17726581	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv613705	chr9:17699981-17726581	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10810834	IFNA21	cis	parietal	SCAN
rs10810834	SH3GL2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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