Variant report

Variant	rs10810847
Chromosome Location	chr9:17758800-17758801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10122834	0.92[EUR][1000 genomes]
rs10738488	0.93[EUR][1000 genomes]
rs10738489	0.91[EUR][1000 genomes]
rs10810851	0.96[CEU][hapmap];0.81[GIH][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs12377594	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1886589	0.82[ASW][hapmap];0.92[CHB][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2182091	1.00[CEU][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs2209424	1.00[CEU][hapmap];0.85[GIH][hapmap];0.95[TSI][hapmap]
rs2209428	0.96[CEU][hapmap];0.81[GIH][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs2209431	0.92[EUR][1000 genomes]
rs2209432	0.96[CEU][hapmap];0.93[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs2224954	0.96[CEU][hapmap];0.81[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs2224955	0.92[EUR][1000 genomes]
rs2296367	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2383047	0.83[CHD][hapmap]
rs2891112	0.84[ASN][1000 genomes]
rs3808667	0.96[CEU][hapmap];0.83[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs3808670	0.90[EUR][1000 genomes]
rs3808673	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3808675	0.92[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3808681	1.00[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs4302941	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4348595	0.92[EUR][1000 genomes]
rs4961593	0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4961594	0.87[ASN][1000 genomes]
rs7036431	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7041545	0.91[EUR][1000 genomes]
rs9298783	0.96[CEU][hapmap];0.83[GIH][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10810847	CNTLN	cis	cerebellum	SCAN
rs10810847	SH3GL2	cis	cerebellum	SCAN
rs10810847	ADAMTSL1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17754800-17772600	Weak transcription	Hela-S3	cervix

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