Variant report

Variant	rs10814239
Chromosome Location	chr9:364675-364676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 245 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10124576	1.00[CHB][hapmap]
rs1062300	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10758289	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10814180	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10814269	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967642	1.00[CHB][hapmap]
rs10968012	1.00[CHB][hapmap]
rs10970457	1.00[CHB][hapmap]
rs10970586	1.00[CHB][hapmap]
rs10970638	1.00[CHB][hapmap]
rs10971151	1.00[ASN][1000 genomes]
rs10971986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10972266	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10972267	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10972268	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10972439	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10972443	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10972449	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10972454	1.00[ASN][1000 genomes]
rs10972570	0.91[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10972611	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10972613	0.80[AMR][1000 genomes]
rs10973132	0.80[EUR][1000 genomes]
rs10973135	0.82[EUR][1000 genomes]
rs10973136	0.81[EUR][1000 genomes]
rs10973142	0.82[EUR][1000 genomes]
rs10973842	1.00[CHB][hapmap]
rs11788744	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791146	1.00[ASN][1000 genomes]
rs11791465	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11791613	1.00[ASN][1000 genomes]
rs11793121	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11793484	1.00[CHB][hapmap]
rs12335694	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12335885	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335901	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339042	1.00[CHB][hapmap]
rs12342634	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12344063	1.00[CHB][hapmap]
rs12344468	1.00[CHB][hapmap]
rs12344657	1.00[CHB][hapmap]
rs12347003	1.00[CHB][hapmap]
rs12347052	1.00[CHB][hapmap]
rs12551785	1.00[ASN][1000 genomes]
rs1410221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1536610	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1536611	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536612	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591578	1.00[CHB][hapmap]
rs16932541	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17664774	1.00[CHB][hapmap]
rs1887956	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34101604	1.00[ASN][1000 genomes]
rs35201673	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35220632	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3739600	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6476030	1.00[CHB][hapmap]
rs7028352	1.00[CHB][hapmap]
rs72701296	1.00[ASN][1000 genomes]
rs73378680	1.00[ASN][1000 genomes]
rs73378684	1.00[ASN][1000 genomes]
rs750586	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs750871	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751352	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7855377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7855392	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7855636	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7856541	1.00[ASN][1000 genomes]
rs7864153	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9298948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9696488	0.84[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:174 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2752304	chr9:40910-409398	Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv948375	chr9:40910-439102	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1021015	chr9:46587-370439	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1034651	chr9:46587-399040	Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv515505	chr9:46587-449700	Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1024015	chr9:46587-449798	Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv469508	chr9:199707-370184	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1025542	chr9:199707-379494	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv530913	chr9:199707-389294	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1026550	chr9:199707-396380	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv1031702	chr9:199707-399040	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv891950	chr9:199707-406117	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv891953	chr9:199707-406117	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv1026580	chr9:199707-449798	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
25	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	nsv1016917	chr9:203310-399040	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	nsv1030075	chr9:203310-496213	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv529085	chr9:203993-381630	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv530915	chr9:203993-500725	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	nsv497899	chr9:204090-381572	Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv915737	chr9:204090-416321	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
34	nsv1067626	chr9:204193-381489	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
35	nsv529293	chr9:204193-381489	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
36	nsv995098	chr9:204193-416351	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
37	nsv612993	chr9:204201-370244	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
38	nsv466042	chr9:204201-389285	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
39	nsv612994	chr9:204201-389285	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
40	nsv466043	chr9:204201-398673	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
41	nsv612995	chr9:204201-398673	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
42	nsv612996	chr9:204201-470086	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
43	nsv491979	chr9:207437-416351	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv1018552	chr9:208354-424875	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
45	nsv1030600	chr9:208354-449798	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
46	nsv891957	chr9:208549-366216	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
47	nsv891958	chr9:208549-452926	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
48	nsv1026708	chr9:209254-366447	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
49	nsv1023186	chr9:209254-373565	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
50	nsv539821	chr9:209254-373565	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:305200-378000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:322400-412200	Strong transcription	Primary T cells from cord blood	blood
3	chr9:322400-447000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:322400-467200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr9:322400-467200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:323600-467200	Strong transcription	Primary B cells from cord blood	blood
7	chr9:335800-371600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:337200-376600	Weak transcription	Colonic Mucosa	Colon
9	chr9:337600-368000	Weak transcription	Gastric	stomach
10	chr9:337800-378400	Weak transcription	Esophagus	oesophagus
11	chr9:345800-369200	Weak transcription	Lung	lung
12	chr9:346000-369800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:346600-368200	Weak transcription	Pancreas	Pancrea
14	chr9:347200-367800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:350400-411200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr9:351200-412400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr9:351200-446600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr9:351800-377800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:352000-365200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:352000-446600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:352200-411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:352400-365600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:352400-365800	Weak transcription	Placenta	Placenta
24	chr9:355000-365600	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:355000-366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:357600-467000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:358000-364800	Weak transcription	Adipose Nuclei	Adipose
28	chr9:358000-370400	Weak transcription	K562	blood
29	chr9:358000-444800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:358200-365800	Weak transcription	Fetal Intestine Large	intestine
31	chr9:359200-371400	Weak transcription	Liver	Liver
32	chr9:359600-365800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr9:360400-412200	Strong transcription	Fetal Thymus	thymus
34	chr9:360400-412400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:360600-377800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:360600-410800	Strong transcription	Dnd41	blood
37	chr9:360600-412400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:360800-380000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr9:360800-403600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:361400-365400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:362000-409400	Strong transcription	Thymus	Thymus
42	chr9:362200-411000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:362600-365800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr9:362800-364800	Weak transcription	Spleen	Spleen
45	chr9:362800-365200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:362800-365800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:362800-365800	Weak transcription	Fetal Intestine Small	intestine
48	chr9:362800-365800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr9:362800-366000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:363000-365600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links