Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:116569447..116570300-chr9:117052628..117053509,2	MCF-7	breast:
2	chr9:116569406..116570272-chr9:116810108..116810697,3	MCF-7	breast:
3	chr9:116569349..116569898-chr9:116795260..116795854,2	K562	blood:
4	chr9:116569351..116570307-chr9:116724834..116725972,6	K562	blood:
5	chr9:116569390..116569990-chr9:116732524..116733419,2	MCF-7	breast:
6	chr9:116569470..116570687-chr9:116760574..116761781,7	MCF-7	breast:
7	chr9:116569383..116570266-chr9:116795410..116796177,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10817521	0.86[MEX][hapmap];0.85[AMR][1000 genomes]
rs10817527	1.00[CEU][hapmap]
rs10981930	0.85[AMR][1000 genomes]
rs10981940	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981945	0.82[AMR][1000 genomes]
rs10981961	1.00[CEU][hapmap]
rs10981969	1.00[CEU][hapmap]
rs10981975	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10981982	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981983	0.82[AMR][1000 genomes]
rs10981990	0.86[AMR][1000 genomes]
rs12237042	1.00[CEU][hapmap]
rs12551439	0.91[AMR][1000 genomes]
rs12551482	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1536967	0.82[AMR][1000 genomes]
rs1590887	0.82[AMR][1000 genomes]
rs16909454	0.83[AMR][1000 genomes]
rs16910261	0.86[MEX][hapmap];0.86[AMR][1000 genomes]
rs2418253	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35929232	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56730168	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57848797	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60668360	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61533724	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7020963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032965	0.82[AMR][1000 genomes]
rs7038455	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9777523	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116567000-116569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:116567200-116569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:116569200-116569600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:116569400-116569800	Enhancers	Ovary	ovary

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