Variant report

Variant	rs10817535
Chromosome Location	chr9:116692059-116692060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116690832..116694105-chr9:116696668..116699935,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513222	0.81[EUR][1000 genomes]
rs10817531	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982007	0.84[EUR][1000 genomes]
rs12343628	0.85[EUR][1000 genomes]
rs12551141	0.98[ASN][1000 genomes]
rs1330169	0.85[EUR][1000 genomes]
rs2065184	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2183364	0.81[EUR][1000 genomes]
rs2418259	0.85[EUR][1000 genomes]
rs35381898	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4979294	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4979295	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4979298	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6478045	0.87[EUR][1000 genomes]
rs6478046	0.85[EUR][1000 genomes]
rs6478047	0.82[EUR][1000 genomes]
rs7038501	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7047895	0.81[EUR][1000 genomes]
rs7855811	0.87[EUR][1000 genomes]
rs882980	0.81[EUR][1000 genomes]
rs944180	0.85[EUR][1000 genomes]
rs9942970	0.85[EUR][1000 genomes]
rs9942975	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney
2	chr9:116690000-116692400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:116690000-116692400	ZNF genes & repeats	A549	lung
4	chr9:116690800-116692800	Weak transcription	Fetal Lung	lung
5	chr9:116691200-116693000	Enhancers	K562	blood
6	chr9:116691200-116694200	Enhancers	HUVEC	blood vessel
7	chr9:116691400-116692200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:116691400-116692400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:116691400-116692400	Enhancers	Gastric	stomach
10	chr9:116691400-116704200	Weak transcription	HSMM	muscle
11	chr9:116691600-116692200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:116691600-116692600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:116691600-116692600	Enhancers	Aorta	Aorta
14	chr9:116691600-116692600	Enhancers	Liver	Liver
15	chr9:116691600-116692600	Enhancers	Stomach Mucosa	stomach
16	chr9:116691600-116692600	Enhancers	NHDF-Ad	bronchial
17	chr9:116691600-116692800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:116691600-116693200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:116691600-116693200	Enhancers	Osteobl	bone
20	chr9:116691600-116695800	Enhancers	Pancreas	Pancrea
21	chr9:116691800-116692600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:116691800-116692600	Enhancers	Hela-S3	cervix
23	chr9:116691800-116693000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:116691800-116693000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:116691800-116693000	Enhancers	Right Atrium	heart
26	chr9:116691800-116693400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr9:116691800-116693600	Enhancers	NH-A	brain
28	chr9:116691800-116696200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:116691800-116696600	Enhancers	Ovary	ovary
30	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:116692000-116692800	Weak transcription	Lung	lung
32	chr9:116692000-116693200	Enhancers	NHLF	lung
33	chr9:116692000-116693600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr9:116692000-116694400	Enhancers	Fetal Heart	heart
35	chr9:116692000-116695000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:116692000-116695400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:116692000-116704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:116692000-116719400	Weak transcription	HMEC	breast

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