Variant report

Variant	rs10821698
Chromosome Location	chr10:52498194-52498195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:52498127-52498316	NB4	blood:	n/a	chr10:52498286-52498301 chr10:52498288-52498298 chr10:52498288-52498297 chr10:52498284-52498299 chr10:52498287-52498298 chr10:52498287-52498298 chr10:52498288-52498298
2	CEBPB	chr10:52498122-52498408	K562	blood:	n/a	n/a
3	USF1	chr10:52498166-52498432	K562	blood:	n/a	n/a
4	USF1	chr10:52498155-52498378	HepG2	liver:	n/a	n/a
5	MAX	chr10:52498191-52498327	K562	blood:	n/a	chr10:52498286-52498301 chr10:52498288-52498298 chr10:52498288-52498297 chr10:52498284-52498299 chr10:52498287-52498298 chr10:52498287-52498298 chr10:52498288-52498298
6	MAX	chr10:52498095-52498425	K562	blood:	n/a	chr10:52498286-52498301 chr10:52498288-52498298 chr10:52498288-52498297 chr10:52498284-52498299 chr10:52498287-52498298 chr10:52498287-52498298 chr10:52498288-52498298
7	POLR2A	chr10:52497985-52498287	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52489655..52491941-chr10:52496784..52498508,2	K562	blood:
2	chr10:52382538..52386733-chr10:52497918..52501112,4	MCF-7	breast:

Variant related genes	Relation type
ASAH2B	TF binding region
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10761449	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821611	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821661	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821678	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10821684	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821706	0.84[EUR][1000 genomes]
rs10821854	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10821859	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10994196	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs3802531	1.00[YRI][hapmap]
rs4245009	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4268458	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs4275568	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4459238	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4536153	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4935177	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4935178	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs56033380	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479701	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7074369	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7089955	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv948007	chr10:52414948-52500270	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1825222	chr10:52477544-52527856	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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