Variant report

Variant	rs10821859
Chromosome Location	chr10:52572653-52572654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52568068..52571258-chr10:52571525..52575297,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10761546	0.87[ASN][1000 genomes]
rs10761548	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821678	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10821698	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10821706	0.81[ASN][1000 genomes]
rs10821825	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821846	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994196	0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs10994489	0.88[ASN][1000 genomes]
rs10994492	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994504	0.88[ASN][1000 genomes]
rs12358745	0.88[ASN][1000 genomes]
rs16751	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802531	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245009	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531415	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550168	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4617537	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935006	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4935007	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935178	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4935191	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935192	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56033380	0.80[ASN][1000 genomes]
rs61858572	0.83[ASN][1000 genomes]
rs6479701	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7068127	0.91[JPT][hapmap]
rs7074369	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7089428	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089955	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7895606	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913937	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917358	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52555200-52575800	Weak transcription	Pancreas	Pancrea
2	chr10:52565800-52575400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
4	chr10:52567200-52574800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:52569000-52573400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr10:52569800-52576400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:52570800-52575800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:52571800-52573200	Strong transcription	Liver	Liver
9	chr10:52572200-52575400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:52572400-52575400	Weak transcription	Fetal Intestine Large	intestine
11	chr10:52572400-52575400	Weak transcription	HepG2	liver

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