Variant report

Variant	rs10821871
Chromosome Location	chr10:52584110-52584111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10821877	1.00[ASW][hapmap];0.88[CEU][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10994191	0.81[JPT][hapmap]
rs10994720	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10994856	0.83[CEU][hapmap];0.84[MEX][hapmap]
rs10994860	0.83[CEU][hapmap];0.84[MEX][hapmap]
rs11815391	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12768916	0.87[ASW][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.87[YRI][hapmap]
rs12768968	0.87[CEU][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28621957	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35182775	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10821871	ASAH2B	cis	Thyroid	GTEx
rs10821871	ASAH2B	cis	lung	GTEx
rs10821871	ASAH2	cis	Thyroid	GTEx
rs10821871	ASAH2B	cis	lymphoblastoid	seeQTL
rs10821871	ASAH2B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
2	chr10:52573400-52588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:52574400-52586600	Strong transcription	Liver	Liver
4	chr10:52575400-52585600	Strong transcription	HepG2	liver
5	chr10:52576800-52597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:52580600-52584400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:52581600-52595800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:52583400-52585400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:52583600-52584800	Enhancers	Pancreas	Pancrea
11	chr10:52584000-52585200	Strong transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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