Variant report

Variant	rs10821887
Chromosome Location	chr10:52616223-52616224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10508933	0.95[JPT][hapmap]
rs10821876	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821888	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591939	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs11598887	0.94[JPT][hapmap]
rs12570156	0.80[ASN][1000 genomes]
rs12768916	0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[ASN][1000 genomes]
rs12769066	0.91[CHD][hapmap];0.81[ASN][1000 genomes]
rs12783029	0.95[JPT][hapmap]
rs16910313	0.81[ASN][1000 genomes]
rs16910442	0.84[CHD][hapmap]
rs4347324	0.95[JPT][hapmap]
rs4459236	0.81[ASN][1000 genomes]
rs4460764	0.95[JPT][hapmap]
rs4935194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068127	0.83[CHB][hapmap];0.96[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821887	WDFY4	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52594800-52617200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:52598200-52622400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52602800-52619200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:52611000-52617200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:52611800-52616800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:52611800-52617000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:52611800-52617200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:52612400-52617200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:52612400-52617200	Weak transcription	Pancreas	Pancrea
12	chr10:52612400-52617400	Weak transcription	HepG2	liver
13	chr10:52613200-52619000	Enhancers	Liver	Liver
14	chr10:52616000-52617000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:52616200-52618800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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