Variant report

Variant	rs10822095
Chromosome Location	chr10:52774917-52774918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10128514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015288	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10761651	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10761657	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10822020	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10822032	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10822040	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10822045	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10822101	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995206	0.83[EUR][1000 genomes]
rs10995339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339680	0.81[EUR][1000 genomes]
rs2879549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756803	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4041333	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479833	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479834	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479835	0.95[CEU][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479836	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479839	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7070037	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7070266	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076050	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7091997	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7093621	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7099130	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7100141	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900993	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7905728	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7916612	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10822095	ARHGAP22	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:52768000-52782800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52772000-52782000	Weak transcription	Right Atrium	heart
4	chr10:52772200-52775400	Weak transcription	Aorta	Aorta
5	chr10:52773600-52775400	Enhancers	NHLF	lung
6	chr10:52774000-52776000	Enhancers	Fetal Lung	lung
7	chr10:52774200-52775000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:52774200-52775000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:52774200-52775000	Enhancers	Liver	Liver
10	chr10:52774200-52775400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:52774200-52775600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:52774200-52776000	Enhancers	Primary T cells from cord blood	blood
13	chr10:52774400-52775400	Enhancers	HSMMtube	muscle
14	chr10:52774400-52776000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:52774600-52775000	Weak transcription	Fetal Stomach	stomach
16	chr10:52774800-52775000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr10:52774800-52775200	Weak transcription	Adipose Nuclei	Adipose
18	chr10:52774800-52787400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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