Variant report

Variant	rs10822197
Chromosome Location	chr10:52854131-52854132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52852996..52855697-chr10:52862209..52864368,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10508935	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10761807	0.84[AMR][1000 genomes]
rs10761810	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761811	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10761831	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10822189	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10822194	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10822198	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10822210	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10822211	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10822230	0.94[EUR][1000 genomes]
rs10995617	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10995620	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10995651	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10995655	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10995673	0.94[EUR][1000 genomes]
rs10995681	0.94[EUR][1000 genomes]
rs12218335	0.83[EUR][1000 genomes]
rs12220644	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12221226	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12415785	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16913900	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16913956	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2339675	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2879544	0.96[EUR][1000 genomes]
rs7074892	0.81[EUR][1000 genomes]
rs7084128	0.83[EUR][1000 genomes]
rs7084767	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7097311	0.83[EUR][1000 genomes]
rs7912628	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9299457	0.81[EUR][1000 genomes]
rs9414805	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9414806	0.81[EUR][1000 genomes]
rs9414807	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9414808	0.81[EUR][1000 genomes]
rs9414809	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9414810	0.83[EUR][1000 genomes]
rs9415709	0.83[EUR][1000 genomes]
rs9415710	0.83[EUR][1000 genomes]
rs9415711	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52843600-52856200	Weak transcription	Aorta	Aorta
2	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
3	chr10:52850200-52863400	Weak transcription	NHLF	lung
4	chr10:52852200-52855600	Weak transcription	Fetal Heart	heart
5	chr10:52852400-52856800	Weak transcription	Ovary	ovary
6	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:52853200-52854200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:52853200-52855400	Weak transcription	Brain Substantia Nigra	brain
9	chr10:52853200-52856000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:52853200-52856000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:52853200-52856000	Weak transcription	Right Atrium	heart
12	chr10:52853200-52857600	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:52853200-52860000	Weak transcription	Fetal Lung	lung
14	chr10:52853400-52856200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:52853400-52857200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:52853400-52857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:52853800-52855200	Enhancers	Psoas Muscle	Psoas
18	chr10:52853800-52856800	Weak transcription	Left Ventricle	heart
19	chr10:52853800-52858200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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