Variant report

Variant	rs10822299
Chromosome Location	chr10:52923784-52923785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1904677	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2339731	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3851088	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3862579	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7068022	0.81[EUR][1000 genomes]
rs7085697	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9414844	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52895200-52924000	Weak transcription	Fetal Stomach	stomach
2	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:52908400-52929600	Weak transcription	Aorta	Aorta
5	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
6	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:52917400-52929000	Weak transcription	NHDF-Ad	bronchial
8	chr10:52922000-52924200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:52922000-52927200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:52922200-52927800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:52922400-52927800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:52922800-52930800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:52923000-52928400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:52923000-52928400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:52923200-52924000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr10:52923600-52928400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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