Variant report

Variant	rs10825107
Chromosome Location	chr10:55525402-55525403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:55525124-55525472	MCF10A-Er-Src	breast:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525293-55525302
2	FOSL2	chr10:55525156-55525422	SK-N-SH	brain:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525293-55525302
3	GATA3	chr10:55524964-55525667	SK-N-SH	brain:	n/a	chr10:55525399-55525415
4	FOS	chr10:55525146-55525434	MCF10A-Er-Src	breast:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525293-55525302
5	GATA3	chr10:55524957-55525626	SK-N-SH	brain:	n/a	chr10:55525399-55525415
6	TCF12	chr10:55524998-55525623	SK-N-SH	brain:	n/a	n/a
7	JUND	chr10:55525030-55525486	SK-N-SH	brain:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525292-55525303 chr10:55525293-55525302
8	FOS	chr10:55525124-55525451	MCF10A-Er-Src	breast:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525293-55525302
9	JUND	chr10:55524956-55525595	SK-N-SH	brain:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525292-55525303 chr10:55525293-55525302
10	JUND	chr10:55525131-55525461	HepG2	liver:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525292-55525303 chr10:55525293-55525302
11	FOS	chr10:55525146-55525447	MCF10A-Er-Src	breast:	n/a	chr10:55525294-55525303 chr10:55525293-55525303 chr10:55525292-55525304 chr10:55525293-55525302

Variant related genes	Relation type
ENSG00000233805	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10825091	0.91[EUR][1000 genomes]
rs10825094	0.90[EUR][1000 genomes]
rs10825095	0.88[EUR][1000 genomes]
rs10825097	0.90[EUR][1000 genomes]
rs10825098	0.90[EUR][1000 genomes]
rs10825099	0.92[EUR][1000 genomes]
rs10825100	0.92[EUR][1000 genomes]
rs10825103	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11003791	0.86[EUR][1000 genomes]
rs11003798	0.86[EUR][1000 genomes]
rs11003814	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1160084	0.93[EUR][1000 genomes]
rs1387661	0.91[EUR][1000 genomes]
rs1578774	0.91[EUR][1000 genomes]
rs17440	0.93[EUR][1000 genomes]
rs17441	0.93[EUR][1000 genomes]
rs2384305	0.84[EUR][1000 genomes]
rs34894703	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245025	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288673	0.87[EUR][1000 genomes]
rs6481032	0.89[EUR][1000 genomes]
rs6481034	0.93[EUR][1000 genomes]
rs6481035	0.93[EUR][1000 genomes]
rs7068100	0.90[EUR][1000 genomes]
rs7068384	0.81[EUR][1000 genomes]
rs7079466	0.90[EUR][1000 genomes]
rs7079611	0.90[EUR][1000 genomes]
rs7081006	0.91[EUR][1000 genomes]
rs7081252	0.93[EUR][1000 genomes]
rs7082190	0.93[EUR][1000 genomes]
rs7089511	0.93[EUR][1000 genomes]
rs7092532	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9731863	0.88[EUR][1000 genomes]
rs9732445	0.88[EUR][1000 genomes]
rs9732474	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757386	chr10:55357136-55531037	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv895410	chr10:55385962-55577022	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2755263	chr10:55394094-55546994	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv895416	chr10:55395380-55539954	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895421	chr10:55408854-55539954	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv428556	chr10:55413202-55586930	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv895425	chr10:55423964-55539954	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv550942	chr10:55478434-55539954	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv895426	chr10:55486017-55526557	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv550943	chr10:55492162-55540590	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv895427	chr10:55493691-55526557	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv550944	chr10:55493691-55536411	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv550945	chr10:55493691-55539954	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv467212	chr10:55499548-55539954	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv550946	chr10:55499548-55539954	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv895428	chr10:55499548-55562176	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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