Variant report

Variant	rs10828792
Chromosome Location	chr10:25687835-25687836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10399962	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs10508694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741075	0.86[JPT][hapmap]
rs10741077	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10764543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10828770	0.86[JPT][hapmap]
rs10828774	1.00[JPT][hapmap]
rs10828775	1.00[JPT][hapmap]
rs10828777	1.00[JPT][hapmap]
rs10828778	1.00[JPT][hapmap]
rs10828791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828793	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10828807	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs11014510	0.89[ASN][1000 genomes]
rs11014527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014528	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11014533	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11014550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11014553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11014554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014558	0.93[JPT][hapmap]
rs11014559	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs1122775	0.83[ASN][1000 genomes]
rs1122776	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1148154	1.00[JPT][hapmap]
rs11818261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219956	0.89[ASN][1000 genomes]
rs12240665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256778	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258359	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258665	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs12259696	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12358447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12762462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12764320	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766749	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773262	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1329259	1.00[JPT][hapmap]
rs1329263	1.00[JPT][hapmap]
rs1329264	0.83[ASN][1000 genomes]
rs1329265	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1340002	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs1341963	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1341964	1.00[JPT][hapmap]
rs1341966	1.00[JPT][hapmap]
rs1410932	1.00[JPT][hapmap]
rs1413397	1.00[JPT][hapmap]
rs1576317	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1576318	0.82[ASN][1000 genomes]
rs1576320	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs1576321	0.83[ASN][1000 genomes]
rs1590836	1.00[JPT][hapmap]
rs1591249	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1591250	0.93[JPT][hapmap]
rs1612200	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1626372	0.83[ASN][1000 genomes]
rs1628986	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1630323	0.83[ASN][1000 genomes]
rs1632593	0.83[ASN][1000 genomes]
rs16925850	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs1754251	1.00[JPT][hapmap]
rs1754253	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1754254	0.83[ASN][1000 genomes]
rs1754255	0.83[ASN][1000 genomes]
rs1754256	0.83[ASN][1000 genomes]
rs1754258	0.83[ASN][1000 genomes]
rs1754260	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1754264	0.83[ASN][1000 genomes]
rs1754265	0.83[ASN][1000 genomes]
rs1754268	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1754269	0.83[ASN][1000 genomes]
rs1754271	0.82[ASN][1000 genomes]
rs1760716	1.00[JPT][hapmap]
rs1760718	1.00[JPT][hapmap]
rs1760727	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1760728	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1760729	0.83[ASN][1000 genomes]
rs1760730	0.83[ASN][1000 genomes]
rs1760733	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1760734	0.83[ASN][1000 genomes]
rs1760735	0.83[ASN][1000 genomes]
rs1760758	1.00[JPT][hapmap]
rs1760759	1.00[JPT][hapmap]
rs1760762	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1760763	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1760764	0.83[ASN][1000 genomes]
rs1760765	0.83[ASN][1000 genomes]
rs1760766	1.00[JPT][hapmap]
rs1760767	1.00[JPT][hapmap]
rs1773607	0.83[ASN][1000 genomes]
rs1773608	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773609	0.83[ASN][1000 genomes]
rs1773612	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773614	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773616	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773617	1.00[JPT][hapmap]
rs1773618	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773622	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773623	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773625	0.93[JPT][hapmap]
rs1773649	1.00[JPT][hapmap]
rs1773650	1.00[JPT][hapmap]
rs1773689	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773690	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1855461	1.00[JPT][hapmap]
rs2795044	1.00[JPT][hapmap]
rs2807248	0.86[JPT][hapmap]
rs2807253	0.93[JPT][hapmap]
rs2807255	1.00[JPT][hapmap]
rs35663899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35973294	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351726	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4431923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs489052	1.00[JPT][hapmap]
rs489186	1.00[JPT][hapmap]
rs495338	1.00[JPT][hapmap]
rs495456	1.00[JPT][hapmap]
rs509285	1.00[JPT][hapmap]
rs516071	1.00[JPT][hapmap]
rs541206	0.94[JPT][hapmap]
rs543850	0.93[JPT][hapmap]
rs558947	0.86[JPT][hapmap]
rs573812	1.00[JPT][hapmap]
rs7079892	1.00[JPT][hapmap]
rs7090972	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091686	0.83[ASN][1000 genomes]
rs7094439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722537	0.87[JPT][hapmap]
rs824145	0.87[JPT][hapmap]
rs824146	0.86[JPT][hapmap]
rs824590	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs824592	1.00[JPT][hapmap]
rs824593	0.83[ASN][1000 genomes]
rs824597	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs824598	1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs824599	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs862192	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25687000-25688400	Enhancers	Gastric	stomach
2	chr10:25687200-25697800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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