Variant report

Variant	rs10832728
Chromosome Location	chr11:17070581-17070582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10766373	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10832733	0.85[AMR][1000 genomes]
rs10832736	0.85[AMR][1000 genomes]
rs11024143	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11024148	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11821773	0.85[AMR][1000 genomes]
rs17472886	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34591697	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35933265	0.80[AMR][1000 genomes]
rs7104247	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7106705	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7107283	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7107745	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7125607	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7927240	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7930058	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7932916	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7937770	0.81[AMR][1000 genomes]
rs7938820	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7939614	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7939750	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7946165	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9919540	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9919600	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv971988	chr11:17068362-17084978	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10832728	OR7E14P	cis	Nerve Tibial	GTEx
rs10832728	OR7E14P	cis	Esophagus Mucosa	GTEx
rs10832728	NUCB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17066800-17070600	Enhancers	Fetal Intestine Small	intestine
2	chr11:17067400-17071000	Enhancers	Fetal Intestine Large	intestine
3	chr11:17067600-17071000	Enhancers	HepG2	liver
4	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
5	chr11:17069600-17070600	Enhancers	Placenta	Placenta
6	chr11:17069800-17071000	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links