Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17085165..17088143-chr11:17093678..17095207,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10832725	0.80[AMR][1000 genomes]
rs10832727	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024113	0.80[ASN][1000 genomes]
rs11024116	0.80[ASN][1000 genomes]
rs11024130	0.81[AMR][1000 genomes]
rs11024131	0.81[AMR][1000 genomes]
rs11024143	0.83[ASN][1000 genomes]
rs12293395	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12575466	0.87[EUR][1000 genomes]
rs4255517	0.80[ASN][1000 genomes]
rs4456241	0.80[ASN][1000 genomes]
rs4517490	0.80[ASN][1000 genomes]
rs6486346	0.81[ASN][1000 genomes]
rs6486347	0.81[AMR][1000 genomes]
rs6486348	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7106705	0.81[ASN][1000 genomes]
rs7106954	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7117166	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7929927	0.80[ASN][1000 genomes]
rs7937880	0.80[EUR][1000 genomes]
rs7949405	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7950225	0.81[EUR][1000 genomes]
rs7952426	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:17083800-17093800	Weak transcription	A549	lung
5	chr11:17084400-17095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:17084800-17095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17085400-17088600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:17085400-17089000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17085400-17089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:17085400-17097200	Weak transcription	Right Ventricle	heart
11	chr11:17085400-17098200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:17086000-17094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:17086600-17088400	Weak transcription	Fetal Stomach	stomach
14	chr11:17086800-17094200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:17087000-17093400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:17087000-17093600	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:17087000-17094000	Weak transcription	Lung	lung
18	chr11:17087000-17095400	Weak transcription	Brain Germinal Matrix	brain
19	chr11:17087000-17098000	Weak transcription	Esophagus	oesophagus

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