Variant report

Variant	rs10832754
Chromosome Location	chr11:17295286-17295287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17294885..17299963-chr11:17371989..17377835,11	K562	blood:
2	chr11:17293894..17295404-chr11:17299540..17302043,2	K562	blood:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10832749	0.83[ASN][1000 genomes]
rs10832753	0.88[ASN][1000 genomes]
rs11024215	0.88[ASN][1000 genomes]
rs11024218	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11024226	0.88[ASN][1000 genomes]
rs11828594	0.80[AFR][1000 genomes]
rs61555995	0.99[ASN][1000 genomes]
rs68175505	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7101938	0.83[ASN][1000 genomes]
rs7111505	0.85[ASN][1000 genomes]
rs7127347	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv1836937	chr11:17291499-17339127	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17286000-17297200	Weak transcription	A549	lung
2	chr11:17286000-17297400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:17289200-17295400	Weak transcription	Placenta	Placenta
4	chr11:17289400-17295400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:17290800-17295400	Weak transcription	K562	blood
6	chr11:17293800-17297200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:17294000-17297000	Enhancers	Dnd41	blood
8	chr11:17294200-17297400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:17294200-17297400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:17294200-17297600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:17294400-17295800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:17294400-17295800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:17294400-17295800	Enhancers	Esophagus	oesophagus
14	chr11:17294400-17297400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:17294400-17297400	Enhancers	Fetal Thymus	thymus
16	chr11:17294400-17297600	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:17294600-17297400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:17294600-17297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:17294600-17297600	Weak transcription	Aorta	Aorta
20	chr11:17294600-17297600	Weak transcription	HMEC	breast
21	chr11:17294800-17295600	Enhancers	Hela-S3	cervix
22	chr11:17294800-17295600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:17294800-17297000	Weak transcription	Fetal Kidney	kidney
24	chr11:17294800-17297400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:17294800-17297600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:17295000-17295600	Weak transcription	Thymus	Thymus
27	chr11:17295000-17297200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:17295000-17297400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:17295000-17297400	Weak transcription	NHEK	skin
30	chr11:17295000-17297600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:17295000-17297600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:17295200-17295600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:17295200-17295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:17295200-17297000	Enhancers	HepG2	liver

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