Variant report

Variant	rs10832776
Chromosome Location	chr11:17385224-17385225
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17371696..17377866-chr11:17385075..17388989,6	K562	blood:
2	chr11:17381506..17383504-chr11:17384001..17386474,2	K562	blood:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1002226	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10734252	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10832778	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024268	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024271	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12146443	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12146652	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557765	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2051772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074314	0.85[AMR][1000 genomes]
rs4439492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5213	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5215	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5219	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7484027	0.82[ASN][1000 genomes]
rs7928810	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10832776	NCR3LG1	cis	Esophagus Mucosa	GTEx
rs10832776	NUCB2	Cis_1M	lymphoblastoid	RTeQTL
rs10832776	RP1-239B22.5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17375400-17388800	Weak transcription	Spleen	Spleen
2	chr11:17375400-17389600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:17375400-17390200	Weak transcription	Small Intestine	intestine
4	chr11:17375600-17388400	Weak transcription	Gastric	stomach
5	chr11:17375600-17388600	Weak transcription	Left Ventricle	heart
6	chr11:17375600-17389000	Weak transcription	Pancreas	Pancrea
7	chr11:17375800-17387600	Weak transcription	Aorta	Aorta
8	chr11:17376000-17385400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:17376000-17387200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:17376000-17387400	Weak transcription	Primary T cells from cord blood	blood
11	chr11:17376000-17387600	Weak transcription	Placenta	Placenta
12	chr11:17376000-17387600	Weak transcription	Ovary	ovary
13	chr11:17376000-17387800	Weak transcription	HSMMtube	muscle
14	chr11:17376000-17388000	Weak transcription	Colonic Mucosa	Colon
15	chr11:17376000-17388200	Weak transcription	Thymus	Thymus
16	chr11:17376000-17388400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:17376000-17388400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:17376000-17389000	Weak transcription	NHLF	lung
19	chr11:17376000-17389800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:17376000-17389800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:17376000-17390000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:17376000-17391000	Weak transcription	Right Ventricle	heart
23	chr11:17376200-17385800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:17376200-17390000	Weak transcription	Fetal Brain Male	brain
25	chr11:17376400-17390000	Weak transcription	HUVEC	blood vessel
26	chr11:17376400-17390600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:17376600-17387600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:17376600-17387800	Weak transcription	NHDF-Ad	bronchial
29	chr11:17376600-17388000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:17376600-17388000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:17376600-17388000	Weak transcription	HMEC	breast
32	chr11:17376600-17388400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:17376600-17389000	Weak transcription	Brain Angular Gyrus	brain
34	chr11:17376600-17391400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:17376800-17387400	Weak transcription	Hela-S3	cervix
36	chr11:17376800-17388800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:17376800-17388800	Weak transcription	Brain Anterior Caudate	brain
38	chr11:17377400-17387200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:17377800-17388400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:17378400-17388200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:17378800-17387200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:17379600-17387600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:17380000-17388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:17380200-17386800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:17380200-17388000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:17380200-17390200	Weak transcription	Osteobl	bone
47	chr11:17380800-17388600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:17381000-17387000	Weak transcription	Dnd41	blood
49	chr11:17381000-17387400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:17381800-17387800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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