Variant report
| Variant | rs10832875 |
|---|---|
| Chromosome Location | chr11:18056572-18056573 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:18047843..18050267-chr11:18056135..18057672,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10488682 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10832871 | 0.83[ASN][1000 genomes] |
| rs10832876 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11024445 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11024449 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11575890 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs172423 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs211104 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs211105 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs211109 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2299626 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv897026 | chr11:17823296-18084878 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:5)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10832875 | RP1-59M18.2 | cis | Adipose Subcutaneous | GTEx |
| rs10832875 | SAAL1 | cis | Artery Tibial | GTEx |
| rs10832875 | SERGEF | cis | Adipose Subcutaneous | GTEx |
| rs10832875 | SAAL1 | cis | lung | GTEx |
| rs10832875 | SAAL1 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18042600-18064600 | Weak transcription | Aorta | Aorta |
