Variant report

Variant	rs10832876
Chromosome Location	chr11:18059929-18059930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10488682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832871	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs10832875	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024433	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs11024434	0.95[CEU][hapmap]
rs11024445	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11024449	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024460	0.83[MEX][hapmap]
rs11575890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172423	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17720530	1.00[CEU][hapmap]
rs211104	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs211105	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs211109	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2299626	0.86[CEU][hapmap]
rs7943725	0.88[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs10832876	SAAL1	cis	lymphoblastoid	seeQTL
rs10832876	SAAL1	Cis_1M	lymphoblastoid	RTeQTL
rs10832876	SAAL1	cis	parietal	SCAN
rs10832876	SAAL1	cis	Artery Tibial	GTEx
rs10832876	TPH1	cis	cerebellum	SCAN
rs10832876	SAAL1	cis	lung	GTEx
rs10832876	SERGEF	cis	Adipose Subcutaneous	GTEx
rs10832876	RP1-59M18.2	cis	Adipose Subcutaneous	GTEx
rs10832876	SAAL1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18042600-18064600	Weak transcription	Aorta	Aorta
2	chr11:18059400-18065400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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