Variant report
| Variant | rs10834134 |
|---|---|
| Chromosome Location | chr11:23572721-23572722 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10400283 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11027271 | 0.84[EUR][1000 genomes] |
| rs11027283 | 0.80[EUR][1000 genomes] |
| rs11027304 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11027305 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11529735 | 0.81[EUR][1000 genomes] |
| rs1381723 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2203869 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2203870 | 0.93[ASN][1000 genomes] |
| rs2222267 | 0.95[ASN][1000 genomes] |
| rs35398780 | 0.95[ASN][1000 genomes] |
| rs61876585 | 0.81[EUR][1000 genomes] |
| rs6483960 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6483961 | 0.85[EUR][1000 genomes] |
| rs6483962 | 0.85[EUR][1000 genomes] |
| rs6483963 | 0.85[EUR][1000 genomes] |
| rs7110430 | 0.84[EUR][1000 genomes] |
| rs7122954 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7943543 | 0.84[EUR][1000 genomes] |
| rs9943612 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038101 | chr11:23556680-23685548 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv553757 | chr11:23564329-23896729 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv467737 | chr11:23564843-23584367 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv553758 | chr11:23564843-23584367 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv467738 | chr11:23564843-23585876 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv553759 | chr11:23564843-23585876 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv467740 | chr11:23569160-23677246 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv553760 | chr11:23569160-23677246 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23561600-23577600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
