Variant report

Variant	rs10835884
Chromosome Location	chr11:32331591-32331592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1022624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022625	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488685	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835879	0.82[EUR][1000 genomes]
rs10835883	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11031704	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031714	0.91[ASN][1000 genomes]
rs11031716	0.91[ASN][1000 genomes]
rs11828433	0.91[ASN][1000 genomes]
rs12285028	0.91[ASN][1000 genomes]
rs12285041	0.91[ASN][1000 genomes]
rs12361455	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2003731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889170	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889172	0.91[ASN][1000 genomes]
rs61889173	0.91[ASN][1000 genomes]
rs7121219	0.91[ASN][1000 genomes]
rs742994	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742995	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928458	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10835884	EIF3M	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32325000-32334200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:32329800-32334600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:32330800-32333400	Enhancers	Hela-S3	cervix
4	chr11:32330800-32334000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:32331400-32332200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:32331400-32333600	Enhancers	A549	lung
7	chr11:32331400-32334200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links