Variant report

Variant	rs10836086
Chromosome Location	chr11:33656179-33656180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33654474..33658649-chr11:33659750..33663424,5	MCF-7	breast:
2	chr11:33651094..33655040-chr11:33655885..33660180,5	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032323	0.90[EUR][1000 genomes]
rs11032328	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11032329	1.00[AMR][1000 genomes]
rs12269870	1.00[AMR][1000 genomes]
rs7121371	1.00[AMR][1000 genomes]
rs7125338	1.00[AMR][1000 genomes]
rs7938097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33640600-33666400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:33640800-33673600	Weak transcription	Fetal Brain Male	brain
3	chr11:33642600-33673600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:33642800-33657400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:33643000-33673600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:33644600-33657600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:33652200-33659600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:33652400-33656200	Strong transcription	Fetal Brain Female	brain
9	chr11:33652400-33659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:33652800-33656400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:33653200-33658400	Weak transcription	Esophagus	oesophagus
12	chr11:33653800-33656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:33654000-33658600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:33654200-33666400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:33654200-33666600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:33654400-33657800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:33654400-33657800	Enhancers	Placenta	Placenta
18	chr11:33654400-33657800	Enhancers	Osteobl	bone
19	chr11:33654800-33656200	Flanking Active TSS	Hela-S3	cervix
20	chr11:33654800-33656800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:33654800-33657000	Flanking Active TSS	A549	lung
22	chr11:33654800-33657800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:33655000-33656800	Enhancers	GM12878-XiMat	blood
24	chr11:33655000-33657600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:33655000-33657800	Enhancers	NHDF-Ad	bronchial
26	chr11:33655200-33656200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr11:33655200-33656200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:33655200-33656400	Weak transcription	Adipose Nuclei	Adipose
29	chr11:33655200-33659000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:33655400-33656800	Enhancers	NH-A	brain
31	chr11:33655600-33656600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:33655800-33656200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:33655800-33656200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:33655800-33656200	Flanking Active TSS	NHEK	skin
35	chr11:33655800-33656800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:33655800-33657200	Enhancers	NHLF	lung
37	chr11:33655800-33657800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:33655800-33657800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:33656000-33656400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:33656000-33657000	Enhancers	HSMM	muscle
41	chr11:33656000-33657400	Enhancers	HSMMtube	muscle
42	chr11:33656000-33657400	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr11:33656000-33658800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr11:33656000-33659400	Enhancers	HMEC	breast
45	chr11:33656000-33667200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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