Variant report

Variant	rs10836169
Chromosome Location	chr11:34273669-34273670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34270206..34274230-chr11:34378598..34380931,3	MCF-7	breast:
2	chr11:34261414..34263986-chr11:34271757..34273793,2	K562	blood:
3	chr11:34267721..34270365-chr11:34272865..34274585,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10768056	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10836168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836178	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11032582	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7946171	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34268200-34274800	Enhancers	Fetal Thymus	thymus
2	chr11:34268800-34274000	Enhancers	HepG2	liver
3	chr11:34268800-34274200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:34270200-34273800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:34270600-34274600	Enhancers	Stomach Smooth Muscle	stomach
6	chr11:34271000-34273800	Enhancers	Fetal Muscle Leg	muscle
7	chr11:34271200-34273800	Enhancers	Left Ventricle	heart
8	chr11:34271400-34273800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:34272000-34273800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:34272200-34273800	Enhancers	HMEC	breast
11	chr11:34272200-34273800	Enhancers	NHLF	lung
12	chr11:34272200-34274200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:34272200-34274600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:34272400-34273800	Enhancers	Stomach Mucosa	stomach
15	chr11:34272400-34274000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr11:34272400-34274800	Enhancers	Brain Substantia Nigra	brain
17	chr11:34272600-34273800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:34272600-34274000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:34272600-34274000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:34272600-34274000	Enhancers	Brain Germinal Matrix	brain
21	chr11:34272600-34274000	Enhancers	Fetal Muscle Trunk	muscle
22	chr11:34272600-34274000	Enhancers	Placenta	Placenta
23	chr11:34272600-34274000	Enhancers	Fetal Stomach	stomach
24	chr11:34272600-34274600	Enhancers	Psoas Muscle	Psoas
25	chr11:34272800-34273800	Enhancers	Spleen	Spleen
26	chr11:34272800-34274000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:34272800-34274000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:34272800-34274800	Enhancers	Right Ventricle	heart
29	chr11:34272800-34275000	Enhancers	Pancreas	Pancrea
30	chr11:34273000-34273800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:34273000-34273800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:34273000-34274000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr11:34273000-34274000	Enhancers	Brain Cingulate Gyrus	brain
34	chr11:34273000-34274000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:34273000-34274400	Weak transcription	Lung	lung
36	chr11:34273000-34277800	Weak transcription	Aorta	Aorta
37	chr11:34273200-34273800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:34273200-34273800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr11:34273200-34273800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:34273200-34273800	Enhancers	Primary B cells from cord blood	blood
41	chr11:34273200-34273800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr11:34273200-34273800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:34273200-34273800	Enhancers	Adipose Nuclei	Adipose
44	chr11:34273200-34273800	Weak transcription	Brain Angular Gyrus	brain
45	chr11:34273200-34273800	Enhancers	Brain Anterior Caudate	brain
46	chr11:34273200-34274000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:34273200-34274000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr11:34273200-34274000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:34273200-34274000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:34273200-34274000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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