Variant report

Variant	rs10836362
Chromosome Location	chr11:35300122-35300123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:35300100-35300250	GM12875	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35295544..35300568-chr11:35411012..35415613,12	MCF-7	breast:
2	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
3	chr11:35298068..35300240-chr11:35306862..35309104,3	MCF-7	breast:
4	chr11:35295688..35300934-chr11:35309144..35319083,18	MCF-7	breast:
5	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
6	chr11:35295369..35301669-chr11:35315160..35319353,7	MCF-7	breast:
7	chr11:35279012..35286392-chr11:35294737..35300890,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255004	TF binding region
ENSG00000110436	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1043101	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10742339	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10742340	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10742341	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10768118	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10768120	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768121	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768122	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768123	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768126	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10836360	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836361	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836367	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10836369	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11033045	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11033046	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11033048	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11524863	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12361171	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12796856	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570214	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570215	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17378105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3088168	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35629461	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3763888	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3794086	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3794089	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794090	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794091	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3794098	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794099	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794100	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794101	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794103	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3847604	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4755394	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755395	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4756203	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756205	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756206	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57339940	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6484778	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7105505	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105690	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7121587	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs736374	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7946149	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs932633	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs932635	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs957350	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9633870	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35283000-35302000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:35284600-35300800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:35285800-35308800	Weak transcription	Gastric	stomach
6	chr11:35296600-35301200	Enhancers	Pancreas	Pancrea
7	chr11:35296800-35300400	Weak transcription	Fetal Brain Female	brain
8	chr11:35297200-35302200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:35297400-35302200	Weak transcription	Adipose Nuclei	Adipose
10	chr11:35297600-35302200	Weak transcription	Fetal Stomach	stomach
11	chr11:35297600-35302200	Weak transcription	Left Ventricle	heart
12	chr11:35297600-35302200	Weak transcription	Right Atrium	heart
13	chr11:35297600-35302600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:35297600-35303000	Weak transcription	HSMMtube	muscle
15	chr11:35297600-35303400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:35297800-35300800	Weak transcription	Brain Germinal Matrix	brain
17	chr11:35297800-35303200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:35298200-35302400	Weak transcription	Aorta	Aorta
20	chr11:35298200-35303600	Weak transcription	A549	lung
21	chr11:35298200-35303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
23	chr11:35298400-35301200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:35298400-35302200	Weak transcription	NHDF-Ad	bronchial
25	chr11:35298400-35302200	Weak transcription	NHLF	lung
26	chr11:35298400-35302600	Weak transcription	Thymus	Thymus
27	chr11:35298400-35303600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:35298400-35303600	Weak transcription	Osteobl	bone
29	chr11:35298600-35302000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:35298600-35303800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:35298800-35302200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:35298800-35302400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:35298800-35303800	Weak transcription	Stomach Mucosa	stomach
34	chr11:35298800-35304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:35298800-35306000	Weak transcription	Brain Anterior Caudate	brain
36	chr11:35299000-35302600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:35299000-35303800	Weak transcription	Hela-S3	cervix
38	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:35299400-35301000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:35299600-35300400	Weak transcription	Liver	Liver
42	chr11:35299600-35303600	Weak transcription	Esophagus	oesophagus
43	chr11:35299600-35303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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