Variant report

Variant	rs10836378
Chromosome Location	chr11:35380236-35380237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35373926..35376824-chr11:35378507..35382009,3	MCF-7	breast:
2	chr11:35377674..35381317-chr11:35383998..35385696,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10836372	0.84[EUR][1000 genomes]
rs10836376	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033073	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033079	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033086	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033087	0.87[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12273644	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1885343	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3847619	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756209	0.84[EUR][1000 genomes]
rs4756212	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756214	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7110985	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs7939421	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942395	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942586	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942698	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:35370200-35380800	Weak transcription	Aorta	Aorta
3	chr11:35370200-35384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:35373000-35380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:35374400-35381400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:35374400-35381600	Weak transcription	Pancreas	Pancrea
7	chr11:35374400-35384600	Weak transcription	Psoas Muscle	Psoas
8	chr11:35374400-35384600	Weak transcription	Right Ventricle	heart
9	chr11:35375000-35383600	Weak transcription	Left Ventricle	heart
10	chr11:35376400-35384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:35376600-35385000	Weak transcription	HSMM	muscle
12	chr11:35377000-35381400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:35377000-35383800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:35377000-35384600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:35377000-35384600	Weak transcription	Right Atrium	heart
16	chr11:35377200-35380400	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:35377200-35380800	Weak transcription	Fetal Brain Male	brain
18	chr11:35377200-35381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:35377200-35384400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:35377200-35384800	Weak transcription	Osteobl	bone
21	chr11:35377600-35381000	Weak transcription	HMEC	breast
22	chr11:35378200-35380400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:35379000-35381200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:35379000-35381800	Enhancers	NHLF	lung
25	chr11:35379000-35382000	Enhancers	Hela-S3	cervix
26	chr11:35379200-35380400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr11:35379200-35382000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:35379400-35382200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:35379400-35382400	Enhancers	NHDF-Ad	bronchial
30	chr11:35379600-35380600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:35379800-35382200	Enhancers	Adipose Nuclei	Adipose
32	chr11:35379800-35382200	Enhancers	Brain Anterior Caudate	brain
33	chr11:35379800-35384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:35380000-35380400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:35380200-35380400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:35380200-35381000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr11:35380200-35381800	Flanking Active TSS	HepG2	liver
38	chr11:35380200-35382200	Flanking Active TSS	Liver	Liver

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