Variant report

Variant	rs10838621
Chromosome Location	chr11:46851459-46851460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46849432..46851635-chr11:46862564..46865490,2	K562	blood:
2	chr11:46851152..46853129-chr11:46870905..46873147,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10838622	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306032	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485690	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6485696	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485702	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118404	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46841000-46853400	Weak transcription	Dnd41	blood
2	chr11:46848400-46856800	Weak transcription	Small Intestine	intestine
3	chr11:46848400-46863800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:46848400-46866200	Weak transcription	Placenta	Placenta
5	chr11:46848800-46854000	Weak transcription	Fetal Intestine Small	intestine
6	chr11:46848800-46854400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:46848800-46857600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:46848800-46862200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:46848800-46865800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:46849000-46853200	Enhancers	HepG2	liver
11	chr11:46849000-46854000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:46849000-46854400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:46849000-46856400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:46849000-46856400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:46849000-46857000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:46849000-46857200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:46849000-46858400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:46849000-46865200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:46849000-46865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:46849000-46865800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:46849000-46865800	Weak transcription	Thymus	Thymus
22	chr11:46849000-46866200	Weak transcription	Primary B cells from cord blood	blood
23	chr11:46849000-46866200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:46849000-46867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:46849200-46854400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:46849200-46859200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:46849200-46859800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:46849200-46860000	Weak transcription	Ovary	ovary
29	chr11:46849200-46860800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:46849200-46861000	Weak transcription	Fetal Thymus	thymus
31	chr11:46849200-46863600	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:46849200-46864400	Weak transcription	Fetal Stomach	stomach
33	chr11:46849200-46866000	Weak transcription	NH-A	brain
34	chr11:46849200-46866200	Weak transcription	Brain Germinal Matrix	brain
35	chr11:46849200-46866600	Weak transcription	Psoas Muscle	Psoas
36	chr11:46849600-46854400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:46849600-46860800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:46849600-46866000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:46849600-46866200	Weak transcription	HSMM	muscle
40	chr11:46849600-46866600	Weak transcription	Brain Angular Gyrus	brain
41	chr11:46849800-46857200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:46849800-46863000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:46850000-46854400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:46850000-46859400	Weak transcription	GM12878-XiMat	blood
45	chr11:46850000-46863600	Weak transcription	HUVEC	blood vessel
46	chr11:46850000-46866000	Weak transcription	NHLF	lung
47	chr11:46850000-46866600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:46850200-46852800	Weak transcription	Hela-S3	cervix
49	chr11:46850200-46854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:46850200-46854400	Weak transcription	HMEC	breast

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