Variant report

Variant	rs10838631
Chromosome Location	chr11:46914583-46914584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46912513..46914705-chr11:47182885..47185106,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10742785	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4752934	1.00[EUR][1000 genomes]
rs4752935	1.00[EUR][1000 genomes]
rs4752937	1.00[EUR][1000 genomes]
rs6485688	1.00[EUR][1000 genomes]
rs6485709	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6485710	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7110643	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7123634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7930852	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7930991	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs898603	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9794941	1.00[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
2	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
8	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
9	chr11:46895400-46917400	Weak transcription	NHLF	lung
10	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
11	chr11:46897400-46921800	Weak transcription	HMEC	breast
12	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
13	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:46898600-46916600	Weak transcription	Liver	Liver
15	chr11:46898800-46916600	Weak transcription	Gastric	stomach
16	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
17	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
20	chr11:46901400-46917400	Weak transcription	NH-A	brain
21	chr11:46905000-46917800	Weak transcription	Right Atrium	heart
22	chr11:46905600-46917400	Weak transcription	Esophagus	oesophagus
23	chr11:46905600-46922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:46907000-46921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:46908000-46915200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:46908000-46916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:46908000-46916800	Weak transcription	Lung	lung
28	chr11:46908000-46917400	Weak transcription	Colonic Mucosa	Colon
29	chr11:46908200-46916600	Weak transcription	Fetal Brain Female	brain
30	chr11:46908400-46916000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:46908600-46916000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:46908600-46916000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:46908600-46916800	Weak transcription	Brain Angular Gyrus	brain
34	chr11:46908800-46918000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:46910000-46918600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:46910400-46917400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:46910400-46919000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr11:46911200-46915800	Weak transcription	Placenta	Placenta
39	chr11:46911200-46916000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:46911200-46916000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:46911200-46916000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
43	chr11:46911600-46914600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:46911600-46916600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:46912000-46915000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:46912000-46916000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:46912000-46916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:46912000-46916000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:46912000-46916000	Weak transcription	Fetal Lung	lung
50	chr11:46912000-46916000	Weak transcription	Pancreas	Pancrea

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