Variant report

Variant	rs10838635
Chromosome Location	chr11:46945227-46945228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46938366..46940511-chr11:46942750..46945558,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1007738	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs10734548	0.85[GIH][hapmap];0.93[TSI][hapmap]
rs10769211	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs10769212	0.80[EUR][1000 genomes]
rs10769225	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769226	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769227	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769228	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769234	0.86[CHB][hapmap]
rs10838629	0.82[EUR][1000 genomes]
rs10838640	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838641	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838644	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838646	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838652	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10838658	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11039014	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs11039028	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039033	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039035	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11039057	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039074	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs11039080	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039081	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11039097	0.83[CHB][hapmap];0.91[GIH][hapmap]
rs11600292	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602250	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606992	0.83[ASN][1000 genomes]
rs11608083	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417519	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.81[ASN][1000 genomes]
rs12796744	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs12807111	0.87[EUR][1000 genomes]
rs1551744	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs17790204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2035068	0.86[EUR][1000 genomes]
rs2087215	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2290884	0.80[EUR][1000 genomes]
rs2306026	0.80[EUR][1000 genomes]
rs2306027	0.83[EUR][1000 genomes]
rs2306035	0.87[EUR][1000 genomes]
rs34340483	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816614	0.80[EUR][1000 genomes]
rs3922684	0.81[ASN][1000 genomes]
rs4269876	0.81[ASN][1000 genomes]
rs4315028	0.84[ASN][1000 genomes]
rs4394802	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4494268	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4498951	0.81[ASN][1000 genomes]
rs4528282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4548577	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4576779	0.80[ASN][1000 genomes]
rs4581406	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587689	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs4752815	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752816	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4752957	0.83[CHB][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap]
rs4752962	0.83[CHB][hapmap]
rs61896133	0.81[ASN][1000 genomes]
rs61896136	0.81[ASN][1000 genomes]
rs6485715	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6485726	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6485739	0.83[CHB][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap]
rs7101374	0.83[GIH][hapmap];0.93[TSI][hapmap]
rs7103581	0.83[CHB][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap]
rs7107778	0.85[GIH][hapmap];0.93[TSI][hapmap]
rs7108822	0.91[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7108902	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs7111270	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7112854	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs7114683	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118170	0.82[EUR][1000 genomes]
rs7123632	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7124648	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7125807	0.82[CHB][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap]
rs7126005	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7127741	0.82[CEU][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7128193	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128650	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7130947	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7929294	0.85[GIH][hapmap];0.92[TSI][hapmap]
rs7929688	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931260	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs7935346	0.81[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7938169	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7939786	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940441	0.86[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.82[MKK][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7945315	0.83[CHB][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap]
rs7945558	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946709	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs7946739	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950753	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs964551	0.85[GIH][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10838635	ACP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46940600-46949600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:46940600-46951400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:46941400-46946400	Weak transcription	Hela-S3	cervix
4	chr11:46941800-46945400	Weak transcription	Stomach Mucosa	stomach
5	chr11:46943000-46946800	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:46943000-46951800	Weak transcription	NHEK	skin
7	chr11:46944600-46945600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:46944600-46946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:46944800-46958200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:46945200-46945400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:46945200-46945400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:46945200-46945400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:46945200-46945400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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