Variant report

Variant	rs10838658
Chromosome Location	chr11:47130778-47130779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47124265..47126644-chr11:47130581..47133177,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10466478	0.82[CHB][hapmap]
rs10501319	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1060573	0.82[CHB][hapmap]
rs10742797	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10769225	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs10769226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10769227	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10769228	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10769234	0.81[CHB][hapmap]
rs10769248	0.86[ASN][1000 genomes]
rs10838635	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838640	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838641	0.87[ASN][1000 genomes]
rs10838644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10838646	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10838652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838660	0.82[CHB][hapmap]
rs10838662	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10838664	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039033	0.82[ASN][1000 genomes]
rs11039035	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11039057	0.81[ASN][1000 genomes]
rs11039074	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11039080	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039081	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039097	0.82[CHB][hapmap]
rs11039098	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039105	0.82[CHB][hapmap]
rs11039112	0.82[CHB][hapmap]
rs11039119	0.82[CHB][hapmap]
rs11600292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11600668	0.82[CHB][hapmap]
rs11601798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602250	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs11603373	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11608083	0.82[ASN][1000 genomes]
rs12417519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12796744	0.82[CHB][hapmap]
rs17790204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1872896	0.82[CHB][hapmap]
rs2087215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279438	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2279439	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34340483	0.81[ASN][1000 genomes]
rs3758666	0.84[ASN][1000 genomes]
rs3758667	0.93[CEU][hapmap]
rs3922684	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269876	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4315028	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4394802	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4494268	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4498951	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4528282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4548577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4576779	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4581406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4587689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs4752816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs4752951	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4752957	0.82[CHB][hapmap]
rs4752965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4752968	0.87[ASN][1000 genomes]
rs4752969	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896133	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896136	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897787	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897844	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61897857	0.84[ASN][1000 genomes]
rs6485715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6485716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6485726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485739	0.82[CHB][hapmap]
rs7103581	0.82[CHB][hapmap]
rs7108822	0.92[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7108902	0.82[CHB][hapmap]
rs7111270	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7112854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113108	0.91[AFR][1000 genomes]
rs7114683	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7121418	0.82[CHB][hapmap]
rs7123632	0.85[ASN][1000 genomes]
rs7124648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7125807	0.82[CHB][hapmap]
rs7126005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7127741	0.84[CEU][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128193	0.82[ASN][1000 genomes]
rs7128650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7130006	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs7130947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs747650	0.82[CHB][hapmap]
rs7929688	0.84[ASN][1000 genomes]
rs7931260	0.82[CHB][hapmap]
rs7935346	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7937410	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7939786	0.84[ASN][1000 genomes]
rs7940240	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7940441	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7945315	0.82[CHB][hapmap]
rs7945558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7946709	0.82[CHB][hapmap]
rs7946739	0.81[ASN][1000 genomes]
rs7950753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7951979	0.92[ASN][1000 genomes]
rs901747	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs923324	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47121200-47132600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:47121600-47140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:47122400-47140400	Weak transcription	Pancreas	Pancrea
4	chr11:47123000-47132600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:47124600-47132800	Weak transcription	Thymus	Thymus
6	chr11:47124600-47133000	Weak transcription	Fetal Thymus	thymus
7	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
8	chr11:47125200-47132400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:47125400-47133400	Enhancers	Fetal Lung	lung
10	chr11:47126400-47132000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:47126600-47130800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:47126600-47133200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:47126800-47130800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:47126800-47130800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:47126800-47130800	Weak transcription	NH-A	brain
16	chr11:47126800-47131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:47126800-47131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:47127000-47130800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:47127000-47131200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:47127600-47132200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:47127600-47133400	Enhancers	Fetal Brain Male	brain
22	chr11:47128000-47131800	Enhancers	Fetal Stomach	stomach
23	chr11:47128400-47132800	Weak transcription	Fetal Intestine Large	intestine
24	chr11:47128400-47133000	Weak transcription	Lung	lung
25	chr11:47128600-47131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:47128600-47131000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:47128600-47140600	Weak transcription	NHEK	skin
28	chr11:47128800-47130800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:47128800-47131000	Weak transcription	Fetal Kidney	kidney
30	chr11:47128800-47132400	Enhancers	Brain Angular Gyrus	brain
31	chr11:47128800-47143400	Weak transcription	Gastric	stomach
32	chr11:47129000-47130800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:47129000-47130800	Weak transcription	Stomach Mucosa	stomach
34	chr11:47129000-47130800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:47129000-47131200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:47129000-47131800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:47129000-47131800	Enhancers	Brain Cingulate Gyrus	brain
38	chr11:47129000-47132200	Enhancers	Brain Anterior Caudate	brain
39	chr11:47129200-47131200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:47129200-47132000	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr11:47129200-47132400	Enhancers	Brain Hippocampus Middle	brain
42	chr11:47129400-47131200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:47129400-47131200	Enhancers	Fetal Brain Female	brain
44	chr11:47129400-47132000	Enhancers	Brain Substantia Nigra	brain
45	chr11:47129400-47132400	Enhancers	Placenta	Placenta
46	chr11:47129400-47158000	Weak transcription	Aorta	Aorta
47	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
48	chr11:47129600-47132000	Enhancers	NHLF	lung
49	chr11:47130000-47131000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:47130000-47131200	Weak transcription	Fetal Muscle Trunk	muscle

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