Variant report

Variant	rs10840287
Chromosome Location	chr11:9702584-9702585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WEE1-2	chr11:9702471-9702785	NONHSAT017933

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10840283	1.00[ASN][1000 genomes]
rs10840284	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10840285	0.87[CEU][hapmap]
rs10840286	1.00[ASN][1000 genomes]
rs11042411	1.00[YRI][hapmap]
rs11042439	0.86[CEU][hapmap]
rs11042440	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11042441	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11042457	1.00[ASN][1000 genomes]
rs11042462	1.00[ASN][1000 genomes]
rs11042464	1.00[ASN][1000 genomes]
rs11042466	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042500	1.00[CHB][hapmap]
rs11042511	1.00[CHB][hapmap]
rs11600183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601008	1.00[ASN][1000 genomes]
rs11603527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607321	1.00[ASN][1000 genomes]
rs11607900	1.00[ASN][1000 genomes]
rs12362879	1.00[ASN][1000 genomes]
rs12364089	1.00[ASN][1000 genomes]
rs12421878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12786236	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789209	1.00[ASN][1000 genomes]
rs12789429	1.00[ASN][1000 genomes]
rs12794270	1.00[ASN][1000 genomes]
rs12797744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801958	1.00[ASN][1000 genomes]
rs12803440	1.00[ASN][1000 genomes]
rs12805683	1.00[ASN][1000 genomes]
rs12807017	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12808226	1.00[CHB][hapmap]
rs17268632	1.00[CHB][hapmap]
rs34063054	1.00[ASN][1000 genomes]
rs35806232	1.00[ASN][1000 genomes]
rs36089180	1.00[ASN][1000 genomes]
rs4910060	1.00[ASN][1000 genomes]
rs4910486	1.00[ASN][1000 genomes]
rs4910487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910488	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910492	1.00[ASN][1000 genomes]
rs4910493	1.00[ASN][1000 genomes]
rs4910497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910505	1.00[CHB][hapmap]
rs56043731	1.00[ASN][1000 genomes]
rs67867011	1.00[ASN][1000 genomes]
rs7120616	1.00[YRI][hapmap]
rs72852112	1.00[ASN][1000 genomes]
rs7943610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9702600	Weak transcription	Gastric	stomach
2	chr11:9686600-9704600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:9686600-9709600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
5	chr11:9686800-9710800	Weak transcription	Aorta	Aorta
6	chr11:9686800-9716400	Weak transcription	Ovary	ovary
7	chr11:9687200-9702600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:9687200-9705000	Weak transcription	HSMM	muscle
9	chr11:9687200-9709400	Weak transcription	HSMMtube	muscle
10	chr11:9687200-9710200	Weak transcription	Hela-S3	cervix
11	chr11:9687400-9702600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:9687400-9709200	Weak transcription	HMEC	breast
13	chr11:9687400-9710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:9687800-9703200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:9687800-9708000	Weak transcription	Pancreas	Pancrea
16	chr11:9687800-9709000	Weak transcription	Adipose Nuclei	Adipose
17	chr11:9688200-9710000	Weak transcription	A549	lung
18	chr11:9689000-9703000	Weak transcription	Fetal Intestine Large	intestine
19	chr11:9689400-9706800	Weak transcription	Placenta	Placenta
20	chr11:9693200-9710000	Weak transcription	Fetal Thymus	thymus
21	chr11:9694400-9703200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:9694800-9709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:9695000-9703200	Weak transcription	Fetal Heart	heart
24	chr11:9695000-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:9695000-9709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:9695000-9709400	Weak transcription	NHLF	lung
27	chr11:9695200-9705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:9695200-9709800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:9695400-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:9696000-9703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:9696200-9709600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:9697000-9703800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:9697000-9709800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:9697400-9703000	Genic enhancers	Primary B cells from peripheral blood	blood
35	chr11:9697400-9705400	Weak transcription	NHDF-Ad	bronchial
36	chr11:9697400-9708000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:9697600-9709600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:9697800-9703200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:9697800-9709800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:9698000-9703200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:9698000-9704200	Weak transcription	Brain Angular Gyrus	brain
42	chr11:9698000-9705000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:9698000-9709200	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:9698800-9708400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:9699200-9703400	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:9699400-9709200	Weak transcription	NHEK	skin
47	chr11:9699800-9709200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:9700000-9709600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:9700200-9702600	Genic enhancers	Primary B cells from cord blood	blood
50	chr11:9700400-9709200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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