Variant report

Variant	rs10845847
Chromosome Location	chr12:14020737-14020738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10845850	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10845851	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1120905	0.80[ASW][hapmap];0.84[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs12582848	0.88[CEU][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap]
rs1861786	0.80[GIH][hapmap];0.88[MEX][hapmap]
rs2193512	0.80[CEU][hapmap];0.87[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs220568	0.88[MEX][hapmap]
rs220573	0.88[MEX][hapmap]
rs220575	0.88[MEX][hapmap]
rs220578	0.88[MEX][hapmap]
rs220587	0.83[GIH][hapmap];0.84[MEX][hapmap]
rs220599	0.85[GIH][hapmap];0.92[MEX][hapmap]
rs2284426	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2417306	0.80[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs4764036	0.83[GIH][hapmap];0.88[MEX][hapmap]
rs7301328	0.82[JPT][hapmap]
rs7311764	0.80[CEU][hapmap]
rs7959821	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10845847	CLEC12B	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:14014800-14020800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr12:14016000-14022800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:14017400-14021200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:14019000-14021000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr12:14019400-14021000	Weak transcription	Fetal Heart	heart
6	chr12:14019400-14021200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:14019400-14021800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:14019400-14033200	Weak transcription	Fetal Kidney	kidney
9	chr12:14020600-14022400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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