Variant report

Variant	rs10846566
Chromosome Location	chr12:124353370-124353371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124353111..124356110-chr12:124447736..124450126,2	K562	blood:
2	chr12:124351615..124353844-chr12:124456020..124457584,2	MCF-7	breast:
3	chr12:124351595..124353635-chr12:124356736..124359144,2	K562	blood:
4	chr12:124350568..124353635-chr12:124356736..124359633,3	K562	blood:
5	chr12:124332831..124334511-chr12:124351979..124354225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179195	Chromatin interaction
ENSG00000119242	Chromatin interaction
ENSG00000270095	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10773040	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10773042	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10773043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846561	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10846563	1.00[ASN][1000 genomes]
rs10846565	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10846567	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10846568	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11057374	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11057375	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs11057378	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11057379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11057380	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11057381	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11057383	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11057385	0.88[ASN][1000 genomes]
rs12228611	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1317312	1.00[CEU][hapmap]
rs1882488	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1882489	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1922257	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1922258	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4390427	0.81[EUR][1000 genomes]
rs4930727	0.94[EUR][1000 genomes]
rs7138100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[ASN][1000 genomes]
rs7297429	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7300037	0.91[EUR][1000 genomes]
rs7300162	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs7313897	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7314963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959043	0.97[ASN][1000 genomes]
rs7960854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7961179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7962016	0.97[ASN][1000 genomes]
rs7980570	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9669530	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124352200-124354200	Enhancers	Fetal Brain Male	brain
2	chr12:124352800-124354600	Enhancers	Fetal Brain Female	brain
3	chr12:124353200-124353600	Enhancers	Brain Hippocampus Middle	brain

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