Variant report

Variant	rs10846574
Chromosome Location	chr12:124385058-124385059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124379452..124381499-chr12:124383777..124386818,3	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10773041	0.82[ASN][1000 genomes]
rs10773046	0.81[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10773047	0.90[ASN][1000 genomes]
rs10846562	0.84[JPT][hapmap]
rs10846564	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10846567	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10846570	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10846571	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10846572	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10846573	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10846575	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10846576	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11057381	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11057383	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11057388	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11057389	0.93[ASN][1000 genomes]
rs11057390	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11057391	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12306328	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12307524	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12309481	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1317312	0.89[JPT][hapmap]
rs1317386	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1882489	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1922258	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2341569	0.80[ASN][1000 genomes]
rs2341779	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs28435362	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28528904	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28654550	0.84[ASN][1000 genomes]
rs34587940	0.82[ASN][1000 genomes]
rs4390427	0.89[ASN][1000 genomes]
rs4930727	0.82[ASN][1000 genomes]
rs57078519	0.83[ASN][1000 genomes]
rs57316347	0.83[ASN][1000 genomes]
rs58411567	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61587964	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6488907	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6488910	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7296123	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7297429	0.84[ASN][1000 genomes]
rs7300037	0.83[ASN][1000 genomes]
rs7303634	0.92[ASN][1000 genomes]
rs7313897	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7314278	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7314335	0.82[ASN][1000 genomes]
rs7959519	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7964324	0.83[ASN][1000 genomes]
rs7970597	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7976319	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7977078	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7977713	0.84[JPT][hapmap]
rs7978781	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9669530	0.94[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv1811815	chr12:124374716-124424636	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1832870	chr12:124374716-124424636	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv522321	chr12:124383950-124424636	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124380000-124385600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr12:124382000-124385400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr12:124382000-124391400	Weak transcription	Fetal Lung	lung
4	chr12:124382200-124385400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:124384000-124408400	Weak transcription	Fetal Brain Female	brain
6	chr12:124384200-124387000	Weak transcription	Spleen	Spleen
7	chr12:124385000-124387200	Enhancers	Fetal Thymus	thymus

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