Variant report

Variant	rs1084986
Chromosome Location	chr1:211630540-211630541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211624302..211626627-chr1:211630248..211632637,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10732682	0.89[EUR][1000 genomes]
rs10779554	0.89[EUR][1000 genomes]
rs1084977	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1084982	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1084983	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10863886	0.89[EUR][1000 genomes]
rs10863887	0.89[EUR][1000 genomes]
rs11804635	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1533219	0.85[EUR][1000 genomes]
rs1533220	0.89[EUR][1000 genomes]
rs1663521	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1707247	0.89[EUR][1000 genomes]
rs1707252	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1707266	0.89[EUR][1000 genomes]
rs1707267	0.89[EUR][1000 genomes]
rs1877476	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1983259	0.89[EUR][1000 genomes]
rs1983260	0.82[EUR][1000 genomes]
rs2358215	0.85[EUR][1000 genomes]
rs2588658	0.81[EUR][1000 genomes]
rs2995846	0.89[EUR][1000 genomes]
rs3123302	0.92[EUR][1000 genomes]
rs3855878	0.89[EUR][1000 genomes]
rs4347268	0.89[EUR][1000 genomes]
rs4370817	0.89[EUR][1000 genomes]
rs4556425	0.89[EUR][1000 genomes]
rs4951517	0.89[EUR][1000 genomes]
rs4951735	0.89[EUR][1000 genomes]
rs4951737	0.89[EUR][1000 genomes]
rs4951738	0.85[EUR][1000 genomes]
rs4951739	0.89[EUR][1000 genomes]
rs4951740	0.85[EUR][1000 genomes]
rs6540675	0.89[EUR][1000 genomes]
rs6540676	0.89[EUR][1000 genomes]
rs6540678	0.89[EUR][1000 genomes]
rs6657779	0.82[EUR][1000 genomes]
rs6663627	0.89[EUR][1000 genomes]
rs6671526	0.89[EUR][1000 genomes]
rs6672233	0.89[EUR][1000 genomes]
rs6688682	0.89[EUR][1000 genomes]
rs6692815	0.89[EUR][1000 genomes]
rs73072839	0.81[EUR][1000 genomes]
rs7517135	0.89[EUR][1000 genomes]
rs7527620	0.89[EUR][1000 genomes]
rs784366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs784367	0.85[EUR][1000 genomes]
rs784368	0.85[EUR][1000 genomes]
rs784370	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs784373	0.85[EUR][1000 genomes]
rs784374	0.92[EUR][1000 genomes]
rs784375	0.92[EUR][1000 genomes]
rs784378	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs784380	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs784381	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs784387	0.89[EUR][1000 genomes]
rs784388	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336593	chr1:211629729-211632027	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211627800-211633200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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