Variant report

Variant	rs10851947
Chromosome Location	chr15:34440103-34440104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:34439982-34440273	HepG2	liver:	n/a	chr15:34440122-34440133
2	FOXA2	chr15:34439373-34440365	A549	lung:	n/a	n/a
3	CEBPB	chr15:34439671-34440304	A549	lung:	n/a	chr15:34440122-34440133
4	FOSL2	chr15:34439377-34440149	A549	lung:	n/a	chr15:34439669-34439678
5	CEBPB	chr15:34439700-34440312	IMR90	lung:	n/a	chr15:34440122-34440133
6	CEBPB	chr15:34439541-34440346	A549	lung:	n/a	chr15:34440122-34440133
7	REST	chr15:34439509-34440146	A549	lung:	n/a	n/a
8	CEBPB	chr15:34440027-34440204	K562	blood:	n/a	chr15:34440122-34440133
9	TCF12	chr15:34439404-34440399	A549	lung:	n/a	n/a
10	FOXA2	chr15:34439477-34440115	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34440103..34442348-chr15:34444785..34446389,2	K562	blood:

Variant related genes	Relation type
KATNBL1	TF binding region
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10438390	1.00[JPT][hapmap]
rs11639176	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853022	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17236847	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17817854	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2164623	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169480	1.00[JPT][hapmap]
rs4587944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643283	0.81[AFR][1000 genomes]
rs4780225	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179357	0.81[AFR][1000 genomes]
rs8039431	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
4	chr15:34428000-34441800	Weak transcription	Esophagus	oesophagus
5	chr15:34428800-34442400	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:34429000-34442400	Weak transcription	Aorta	Aorta
7	chr15:34429000-34444400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:34429200-34446200	Strong transcription	Placenta	Placenta
9	chr15:34429400-34445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:34429400-34445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:34429400-34445800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:34429600-34444800	Strong transcription	Adipose Nuclei	Adipose
13	chr15:34429600-34446400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:34429800-34446400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:34430200-34440200	Weak transcription	Ovary	ovary
17	chr15:34430200-34443000	Weak transcription	Fetal Brain Male	brain
18	chr15:34430200-34443800	Weak transcription	GM12878-XiMat	blood
19	chr15:34430200-34445600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:34430200-34446000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:34430400-34443000	Weak transcription	Fetal Heart	heart
22	chr15:34430600-34446600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:34431000-34446200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:34431000-34446400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:34431200-34445600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:34431200-34446400	Weak transcription	K562	blood
27	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:34431400-34446000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:34431400-34446800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:34431600-34442600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:34432000-34440400	Weak transcription	Small Intestine	intestine
32	chr15:34432000-34446400	Weak transcription	Brain Substantia Nigra	brain
33	chr15:34432800-34446400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:34433000-34446600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:34433000-34446800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:34433200-34441800	Weak transcription	Pancreas	Pancrea
37	chr15:34433200-34442800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:34433200-34448200	Weak transcription	Gastric	stomach
39	chr15:34433400-34443400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:34433400-34446400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:34433400-34453200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:34434000-34453000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:34434200-34446200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:34434200-34446400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:34434400-34446400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:34434400-34450200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr15:34434600-34446600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:34434800-34444800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:34435000-34441600	Weak transcription	Right Ventricle	heart
50	chr15:34435000-34442000	Weak transcription	NHDF-Ad	bronchial

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