Variant report

Variant	rs10851955
Chromosome Location	chr15:34510166-34510167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34500858..34503778-chr15:34509376..34510896,2	MCF-7	breast:
2	chr15:34509090..34511526-chr15:34517586..34519946,2	MCF-7	breast:
3	chr15:34501162..34503390-chr15:34507546..34510733,3	K562	blood:
4	chr15:34499403..34506943-chr15:34508287..34513350,9	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction
ENSG00000128463	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10851952	0.89[ASN][1000 genomes]
rs11073010	0.89[ASN][1000 genomes]
rs11073014	0.89[ASN][1000 genomes]
rs11073019	0.93[ASN][1000 genomes]
rs11635964	0.89[ASN][1000 genomes]
rs11854686	0.88[ASN][1000 genomes]
rs11857205	0.88[ASN][1000 genomes]
rs11858408	0.96[ASN][1000 genomes]
rs12437551	0.89[ASN][1000 genomes]
rs12441003	0.90[ASN][1000 genomes]
rs12442758	0.94[ASN][1000 genomes]
rs12592460	0.82[ASN][1000 genomes]
rs12917397	0.89[ASN][1000 genomes]
rs1978810	0.88[ASN][1000 genomes]
rs28375867	0.80[ASN][1000 genomes]
rs28418847	0.80[ASN][1000 genomes]
rs28652966	0.93[ASN][1000 genomes]
rs34187931	0.80[ASN][1000 genomes]
rs4381574	0.96[ASN][1000 genomes]
rs4780227	0.95[ASN][1000 genomes]
rs4780229	0.96[ASN][1000 genomes]
rs56731918	0.91[ASN][1000 genomes]
rs57502425	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57834992	0.80[ASN][1000 genomes]
rs58875083	0.91[ASN][1000 genomes]
rs60905714	0.80[ASN][1000 genomes]
rs6495625	0.81[ASN][1000 genomes]
rs7164448	0.84[ASN][1000 genomes]
rs7168619	0.85[ASN][1000 genomes]
rs7168761	0.85[ASN][1000 genomes]
rs7173618	0.80[ASN][1000 genomes]
rs7178002	0.80[ASN][1000 genomes]
rs7178988	0.91[ASN][1000 genomes]
rs7180024	0.80[ASN][1000 genomes]
rs7180920	0.82[ASN][1000 genomes]
rs7181687	0.91[ASN][1000 genomes]
rs7181902	0.91[ASN][1000 genomes]
rs73380126	0.80[ASN][1000 genomes]
rs73380135	0.80[ASN][1000 genomes]
rs73380141	0.80[ASN][1000 genomes]
rs73380157	0.80[ASN][1000 genomes]
rs8026939	0.93[ASN][1000 genomes]
rs8027499	0.90[ASN][1000 genomes]
rs8027830	0.91[ASN][1000 genomes]
rs8034315	0.91[ASN][1000 genomes]
rs8036468	0.94[ASN][1000 genomes]
rs8040071	0.81[ASN][1000 genomes]
rs8041977	0.85[ASN][1000 genomes]
rs8043216	0.87[ASN][1000 genomes]
rs9944206	0.80[ASN][1000 genomes]
rs9972505	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10851955	NOP10	cis	Thyroid	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34505000-34510200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:34507200-34516200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:34509200-34510400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:34509200-34510400	Enhancers	NHDF-Ad	bronchial
5	chr15:34509200-34510600	Enhancers	Hela-S3	cervix
6	chr15:34509600-34510200	Enhancers	K562	blood
7	chr15:34509600-34510400	Enhancers	NHEK	skin
8	chr15:34509600-34510600	Enhancers	HMEC	breast
9	chr15:34509600-34510600	Enhancers	NH-A	brain
10	chr15:34509800-34510200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:34509800-34510200	Enhancers	HUVEC	blood vessel
12	chr15:34509800-34510400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:34509800-34510400	Enhancers	HSMM	muscle
14	chr15:34509800-34510400	Enhancers	HSMMtube	muscle
15	chr15:34509800-34510400	Enhancers	Osteobl	bone
16	chr15:34509800-34510600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:34510000-34510200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:34510000-34510200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:34510000-34510400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:34510000-34510400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:34510000-34510400	Enhancers	NHLF	lung

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