Variant report

Variant	rs10857389
Chromosome Location	chr4:142009460-142009461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10018636	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11100701	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11100702	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4956503	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55702317	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6836603	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6836846	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7441485	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7441524	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7441557	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7441706	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7441737	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9884674	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9884757	0.90[EUR][1000 genomes]
rs9884916	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880169	chr4:142005573-142038481	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141999200-142014000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart
3	chr4:142001000-142014200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:142001200-142012600	Weak transcription	Ovary	ovary
5	chr4:142003600-142015600	Weak transcription	Fetal Stomach	stomach
6	chr4:142003600-142021000	Weak transcription	Fetal Kidney	kidney
7	chr4:142005000-142017800	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:142006400-142009600	Weak transcription	Fetal Heart	heart
9	chr4:142006800-142011200	Weak transcription	Aorta	Aorta
10	chr4:142008600-142011000	Weak transcription	Fetal Intestine Large	intestine
11	chr4:142009000-142009600	Enhancers	Left Ventricle	heart
12	chr4:142009000-142010400	Strong transcription	Fetal Muscle Leg	muscle
13	chr4:142009200-142011000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links