Variant report

Variant	rs10857509
Chromosome Location	chr10:50773636-50773637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50767252..50769904-chr10:50772463..50774658,3	MCF-7	breast:
2	chr10:50768064..50770893-chr10:50771784..50774255,2	K562	blood:
3	chr10:50770715..50773687-chr10:50775612..50777273,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10776582	0.97[ASN][1000 genomes]
rs10857507	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10857508	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101159	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101165	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101166	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11101175	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11527800	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221479	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12242851	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12412526	0.82[EUR][1000 genomes]
rs12570332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1917801	0.83[ASN][1000 genomes]
rs1917802	0.83[ASN][1000 genomes]
rs1917817	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1949883	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1949884	0.86[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2103202	0.88[ASN][1000 genomes]
rs2177820	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2377902	0.81[ASN][1000 genomes]
rs3750746	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3750751	1.00[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs3750752	0.81[CHD][hapmap]
rs4240510	0.82[EUR][1000 genomes]
rs4253079	0.82[EUR][1000 genomes]
rs4253231	1.00[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap]
rs4453140	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4838522	0.82[EUR][1000 genomes]
rs4838527	0.83[ASN][1000 genomes]
rs4838529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6537539	0.90[ASN][1000 genomes]
rs7078115	0.97[ASN][1000 genomes]
rs7080837	0.97[ASN][1000 genomes]
rs7081904	0.97[ASN][1000 genomes]
rs7095259	0.97[ASN][1000 genomes]
rs7098129	0.88[ASN][1000 genomes]
rs72795703	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50770200-50773800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr10:50771800-50776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:50771800-50779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:50772000-50775600	Weak transcription	GM12878-XiMat	blood
5	chr10:50772000-50775600	Weak transcription	HSMM	muscle
6	chr10:50772600-50776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:50772800-50775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:50773000-50776000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:50773000-50776000	Weak transcription	HSMMtube	muscle
10	chr10:50773200-50775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:50773200-50775600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:50773200-50776200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:50773400-50775000	Weak transcription	Hela-S3	cervix
14	chr10:50773400-50775600	Weak transcription	HMEC	breast
15	chr10:50773400-50775800	Weak transcription	Osteobl	bone
16	chr10:50773400-50776000	Weak transcription	Placenta Amnion	Placenta Amnion

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