Variant report

Variant	rs10857543
Chromosome Location	chr10:51030338-51030339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:51028291..51030720-chr10:51030786..51035251,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2015984	0.84[ASN][1000 genomes]
rs4420183	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58501852	0.80[ASN][1000 genomes]
rs59632809	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6537553	1.00[ASN][1000 genomes]
rs7904589	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
2	chr10:51020400-51049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:51021800-51032800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:51021800-51033400	Weak transcription	Osteobl	bone
5	chr10:51021800-51039600	Weak transcription	Psoas Muscle	Psoas
6	chr10:51022200-51034800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:51022600-51035800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:51023000-51030400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:51023000-51031000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:51023000-51031000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:51023600-51031000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr10:51024000-51036600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:51024000-51052800	Weak transcription	NHLF	lung
14	chr10:51024200-51034200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:51024200-51053200	Weak transcription	Fetal Brain Male	brain
16	chr10:51024600-51030400	Strong transcription	HepG2	liver
17	chr10:51024600-51030800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:51024600-51054800	Weak transcription	Fetal Heart	heart
19	chr10:51024800-51030800	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:51025200-51031000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr10:51025400-51030600	Strong transcription	Dnd41	blood
22	chr10:51025400-51031000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:51025400-51031000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:51025400-51031000	Strong transcription	Aorta	Aorta
25	chr10:51025400-51031000	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:51025400-51031000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:51025600-51030600	Strong transcription	Ovary	ovary
28	chr10:51025600-51031000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr10:51025800-51037000	Strong transcription	Primary T cells from cord blood	blood
30	chr10:51025800-51047800	Weak transcription	HMEC	breast
31	chr10:51026200-51039000	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:51026200-51039600	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:51026400-51047200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:51027200-51038000	Weak transcription	HUVEC	blood vessel
35	chr10:51027400-51030600	Weak transcription	NHDF-Ad	bronchial
36	chr10:51027600-51034400	Weak transcription	HSMMtube	muscle
37	chr10:51027600-51034800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:51027800-51039400	Weak transcription	Esophagus	oesophagus
39	chr10:51028000-51039400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:51028000-51039600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:51028200-51030400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:51028200-51032800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:51028200-51034000	Weak transcription	Fetal Thymus	thymus
44	chr10:51028200-51034200	Weak transcription	Brain Angular Gyrus	brain
45	chr10:51028200-51034800	Weak transcription	Fetal Intestine Large	intestine
46	chr10:51028200-51036400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:51028200-51039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:51028200-51039600	Weak transcription	Brain Substantia Nigra	brain
49	chr10:51028200-51039600	Weak transcription	Lung	lung
50	chr10:51028200-51046600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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